Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH20_RS00565 Genome accession   NZ_CP126110
Coordinates   114342..115724 (+) Length   460 a.a.
NCBI ID   WP_283921037.1    Uniprot ID   -
Organism   Neobacillus sp. WH10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 109342..120724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH20_RS00545 (QNH20_00545) - 109386..109847 (+) 462 WP_283921033.1 CtsR family transcriptional regulator -
  QNH20_RS00550 (QNH20_00550) - 109872..110420 (+) 549 WP_283921034.1 UvrB/UvrC motif-containing protein -
  QNH20_RS00555 (QNH20_00555) - 110422..111492 (+) 1071 WP_283921035.1 protein arginine kinase -
  QNH20_RS00560 (QNH20_00560) clpC 111510..113951 (+) 2442 WP_283921036.1 ATP-dependent protease ATP-binding subunit ClpC -
  QNH20_RS00565 (QNH20_00565) radA 114342..115724 (+) 1383 WP_283921037.1 DNA repair protein RadA Machinery gene
  QNH20_RS00570 (QNH20_00570) disA 115728..116801 (+) 1074 WP_283921038.1 DNA integrity scanning diadenylate cyclase DisA -
  QNH20_RS00575 (QNH20_00575) - 117100..118188 (+) 1089 WP_283921039.1 PIN/TRAM domain-containing protein -
  QNH20_RS00580 (QNH20_00580) ispD 118225..118917 (+) 693 WP_283921040.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNH20_RS00585 (QNH20_00585) ispF 118917..119393 (+) 477 WP_283921041.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49958.42 Da        Isoelectric Point: 6.8337

>NTDB_id=836424 QNH20_RS00565 WP_283921037.1 114342..115724(+) (radA) [Neobacillus sp. WH10]
MAKRKTKFMCQECGYESPKWMGKCPGCGQWNKMIEEVEVTGSTRRGAFAHSQSGSNLLTKPMPINSIEMENEPRILTDLK
ELNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLAGKGNQVLYISGEESLRQTKLRAERLGIATENLLVYAETNLEE
INRTIDSTNPSFVIIDSIQTIFHPDVTSAPGSVSQVRECTSELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVENPSEIFLEERSRGAAGSTVVASMEGTRPVLVEIQALISPT
SFGNPRRMATGIDHNRVPLLMAVLEKRVGMLLANQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDRPTRPTDCIIGEVG
LTGEVRRVSRIEQRVQEAAKLGFERVILPANNLSGWTGPTGVQLIGVSSVSEALEAALGG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=836424 QNH20_RS00565 WP_283921037.1 114342..115724(+) (radA) [Neobacillus sp. WH10]
ATGGCAAAACGAAAAACAAAGTTTATGTGTCAGGAGTGCGGGTATGAATCTCCAAAGTGGATGGGGAAGTGCCCAGGCTG
TGGACAATGGAATAAGATGATTGAGGAAGTAGAAGTAACAGGTTCAACGAGAAGAGGGGCTTTTGCTCATTCTCAAAGTG
GATCCAATTTATTAACCAAACCAATGCCCATTAATTCGATTGAAATGGAAAATGAACCAAGAATCCTTACCGACTTAAAA
GAGCTAAATCGGGTGCTTGGCGGCGGTGTCGTTAAGGGATCGTTAGTATTAATTGGCGGAGACCCTGGGATTGGTAAGTC
TACTCTTCTCCTGCAGGTATCTTCACAGCTTGCGGGTAAAGGGAATCAGGTTTTATACATATCTGGTGAAGAGTCATTAA
GGCAGACAAAGCTTCGTGCGGAACGATTAGGGATTGCCACAGAAAATCTATTAGTATATGCAGAAACGAATTTGGAAGAA
ATTAATCGAACCATTGATAGCACGAATCCTAGCTTCGTGATTATTGATTCTATCCAAACAATTTTCCATCCGGATGTGAC
ATCAGCACCGGGCAGTGTATCACAAGTCCGCGAATGCACCTCTGAATTAATGAGGATTGGTAAAACAAAAGGAATTGCTA
TTTTTATTGTTGGCCACGTAACAAAAGAGGGATCCATAGCAGGTCCAAGGCTGTTAGAGCACATGGTGGATACAGTCCTT
TATTTTGAAGGGGAAAGACATCATACATACCGAATTTTAAGGGCTGTTAAAAACCGCTTTGGTTCTACAAATGAAATGGG
TATTTTTGAAATGAAGGAATTTGGCCTCGAGGAAGTGGAAAACCCGTCAGAAATCTTTCTCGAAGAACGGTCACGGGGAG
CAGCAGGCTCGACGGTAGTAGCATCAATGGAAGGAACCCGTCCGGTTCTCGTTGAAATACAAGCGTTAATTTCGCCAACG
AGCTTTGGGAATCCAAGAAGAATGGCGACAGGAATTGACCATAACCGTGTGCCGCTTTTAATGGCAGTCCTAGAAAAGCG
GGTAGGGATGCTTCTAGCGAACCAAGATGCTTATTTAAAAGTAGCAGGAGGGGTGAAATTAGATGAACCTGCTATTGACT
TAGCTGTAGCCGTAAGTATTGCTTCTAGTTTCAGGGATAGACCTACAAGGCCCACAGATTGTATCATTGGCGAAGTTGGA
TTAACAGGTGAAGTAAGAAGGGTGTCACGAATTGAGCAGAGGGTCCAAGAAGCTGCAAAACTGGGCTTTGAGCGCGTGAT
ATTACCAGCTAATAATTTGAGCGGTTGGACAGGACCAACAGGTGTTCAGCTCATTGGTGTCTCGTCAGTTAGCGAGGCAC
TTGAAGCAGCGTTGGGAGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(77-224)

Subunit ChlI of Mg-chelatase (ChlI)

(368-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.356

100

0.765
  radA Streptococcus mitis NCTC 12261

62.527

99.783

0.624
  radA Streptococcus mitis SK321

62.527

99.783

0.624
  radA Streptococcus pneumoniae Rx1

62.527

99.783

0.624
  radA Streptococcus pneumoniae D39

62.527

99.783

0.624
  radA Streptococcus pneumoniae R6

62.527

99.783

0.624
  radA Streptococcus pneumoniae TIGR4

62.527

99.783

0.624