Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH15_RS14990 Genome accession   NZ_CP126109
Coordinates   2855402..2857111 (-) Length   569 a.a.
NCBI ID   WP_283889159.1    Uniprot ID   -
Organism   Fictibacillus enclensis strain TL11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2850402..2862111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH15_RS14975 (QNH15_14975) - 2852558..2852794 (+) 237 WP_283889157.1 DUF2627 domain-containing protein -
  QNH15_RS14980 (QNH15_14980) spo0A 2852893..2853699 (-) 807 WP_061970925.1 sporulation transcription factor Spo0A -
  QNH15_RS14985 (QNH15_14985) spoIVB 2853960..2855261 (-) 1302 WP_283889158.1 SpoIVB peptidase -
  QNH15_RS14990 (QNH15_14990) recN 2855402..2857111 (-) 1710 WP_283889159.1 DNA repair protein RecN Machinery gene
  QNH15_RS14995 (QNH15_14995) argR 2857163..2857612 (-) 450 WP_283889160.1 transcriptional regulator ArgR -
  QNH15_RS15000 (QNH15_15000) - 2857776..2858603 (-) 828 WP_283889161.1 TlyA family RNA methyltransferase -
  QNH15_RS15005 (QNH15_15005) dxs 2858600..2860501 (-) 1902 WP_283889162.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH15_RS15010 (QNH15_15010) - 2860523..2861122 (-) 600 WP_061970938.1 hypothetical protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63869.62 Da        Isoelectric Point: 4.8483

>NTDB_id=836400 QNH15_RS14990 WP_283889159.1 2855402..2857111(-) (recN) [Fictibacillus enclensis strain TL11]
MLAELSIRNFAIIEALTISFNKGLTVLTGETGAGKSIIIDAIGLLIGGRGSSEFVRYGTAKAEIEGLFLVDAPHPVYAKA
EELGIDIPDGMVVLKRDIMESGKSVCRINGKLVTLTLLKDIGQSLVDIHGQHETQYLMQPEMHLSLLDSFGGEEMEQLIA
QYQSVYANYKDLHKQLRNLTENEQQMNQRLDLIQYQLEEINSAELLANEDDELQEEKLKLGNYEKLFNSLQDSYESLYGE
NKGIENVSVALSHLQNVADLDDELNKLQENVANHFYALEEAAFTIRNYFETMEFDPARLDFIETRLNEISKLKRKYGNSV
NEILDYAAKIEKELDMLQNKDGNIESLRQELQKKEKQLYKNAMKLSKKRKKLAESLIADIHQELKALYMEKTVFDIRISS
LGEEGAVREQDFGKYGSDHAEFFISTNPGEPLKPLAKVASGGELSRVILALKSIFSEHQGITAIIFDEVDTGVSGRVAQA
IAEKIFRVSEGSQVLCITHLPQVAAMADTHLHISKETTNKRTTTHVVSLETSQKVNEIGRMISGVEITELTKQHARELLD
LADEIKKTS

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=836400 QNH15_RS14990 WP_283889159.1 2855402..2857111(-) (recN) [Fictibacillus enclensis strain TL11]
TTGCTGGCAGAATTAAGCATCCGCAATTTTGCGATTATAGAGGCATTAACCATTTCATTTAATAAAGGATTAACGGTTTT
AACGGGTGAAACAGGTGCAGGTAAATCCATTATTATTGACGCTATTGGTTTGCTTATAGGAGGAAGAGGATCTTCTGAAT
TCGTGCGTTATGGAACCGCCAAAGCAGAGATCGAAGGCTTGTTTTTGGTGGATGCTCCGCATCCTGTTTATGCGAAGGCG
GAAGAGTTGGGTATTGATATTCCCGACGGCATGGTGGTTTTAAAAAGAGACATAATGGAATCAGGAAAAAGTGTATGCCG
GATCAATGGCAAGCTTGTGACGCTTACGCTGCTGAAAGATATTGGGCAATCGCTGGTGGATATCCATGGACAGCATGAAA
CCCAATACCTTATGCAGCCGGAGATGCATTTGTCGCTTTTGGACAGCTTTGGCGGCGAAGAAATGGAGCAATTGATCGCC
CAATATCAGTCGGTTTATGCAAACTATAAGGATCTTCATAAGCAGTTGAGGAACTTGACTGAAAATGAACAGCAGATGAA
TCAGCGGCTGGATTTAATCCAATACCAGCTGGAGGAGATCAACAGTGCGGAACTTCTTGCAAATGAAGATGATGAGCTGC
AGGAAGAGAAGCTGAAGCTCGGTAATTACGAGAAGCTGTTCAACAGCCTTCAGGATTCGTATGAATCTCTGTACGGAGAA
AACAAAGGGATTGAGAATGTATCTGTCGCATTAAGCCATTTGCAGAATGTGGCCGATCTGGATGACGAACTGAATAAGCT
GCAGGAAAATGTCGCCAATCACTTTTATGCGCTCGAAGAAGCGGCGTTTACCATTCGCAATTACTTTGAAACGATGGAGT
TTGATCCGGCAAGGCTGGATTTTATTGAAACAAGGCTAAATGAGATCAGCAAGCTGAAAAGAAAATACGGCAACAGTGTA
AATGAGATCTTGGACTATGCCGCTAAAATTGAAAAAGAACTTGACATGCTCCAGAACAAGGACGGTAATATTGAAAGCCT
TCGTCAGGAGCTGCAGAAAAAAGAAAAGCAGCTGTATAAAAACGCCATGAAGTTAAGTAAAAAACGAAAAAAACTTGCAG
AAAGCCTGATCGCAGATATTCATCAGGAGCTTAAAGCACTCTATATGGAAAAAACGGTGTTTGACATAAGGATTTCCTCT
TTAGGGGAGGAAGGTGCAGTGCGTGAGCAGGATTTTGGAAAGTATGGAAGCGACCATGCAGAGTTTTTCATTTCAACGAA
TCCCGGTGAACCATTAAAGCCGCTTGCCAAAGTGGCATCGGGCGGGGAGCTTTCCCGGGTTATTCTTGCATTAAAGTCCA
TTTTTTCAGAGCATCAGGGCATCACAGCCATCATTTTTGACGAAGTGGATACCGGTGTCAGCGGAAGAGTCGCCCAAGCG
ATCGCTGAAAAAATCTTCAGGGTGTCCGAAGGCTCTCAGGTTCTGTGTATTACGCATTTGCCGCAGGTGGCTGCCATGGC
GGATACCCATTTGCATATTTCAAAAGAAACCACCAACAAGCGCACCACCACTCATGTTGTATCACTGGAAACCAGTCAAA
AGGTCAACGAAATTGGCCGGATGATTTCAGGTGTGGAAATTACCGAATTGACGAAACAGCATGCAAGGGAGCTTCTTGAT
CTGGCGGATGAAATAAAAAAAACCTCATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.783

100

0.594