Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH15_RS00565 Genome accession   NZ_CP126109
Coordinates   106689..108065 (+) Length   458 a.a.
NCBI ID   WP_283891849.1    Uniprot ID   -
Organism   Fictibacillus enclensis strain TL11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101689..113065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH15_RS00545 (QNH15_00545) - 101920..102390 (+) 471 WP_061975615.1 CtsR family transcriptional regulator -
  QNH15_RS00550 (QNH15_00550) - 102428..102964 (+) 537 WP_283891846.1 UvrB/UvrC motif-containing protein -
  QNH15_RS00555 (QNH15_00555) - 102968..104035 (+) 1068 WP_283891847.1 protein arginine kinase -
  QNH15_RS00560 (QNH15_00560) clpC 104061..106493 (+) 2433 WP_283891848.1 ATP-dependent protease ATP-binding subunit ClpC -
  QNH15_RS00565 (QNH15_00565) radA 106689..108065 (+) 1377 WP_283891849.1 DNA repair protein RadA Machinery gene
  QNH15_RS00570 (QNH15_00570) disA 108069..109142 (+) 1074 WP_061975624.1 DNA integrity scanning diadenylate cyclase DisA -
  QNH15_RS00575 (QNH15_00575) - 109227..110318 (+) 1092 WP_283891851.1 PIN/TRAM domain-containing protein -
  QNH15_RS00580 (QNH15_00580) ispD 110379..111092 (+) 714 WP_283891853.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNH15_RS00585 (QNH15_00585) ispF 111067..111543 (+) 477 WP_283891855.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QNH15_RS00590 (QNH15_00590) gltX 111595..113061 (+) 1467 WP_283891857.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49769.17 Da        Isoelectric Point: 7.0554

>NTDB_id=836379 QNH15_RS00565 WP_283891849.1 106689..108065(+) (radA) [Fictibacillus enclensis strain TL11]
MAKNKSVFMCQECGYESPKWMGKCPGCHQWNTMVEEVIKKDTPTRGLSTSSSSGTQQKPQSIVSVKSEQEPRINTHTTEL
NRVLGGGIVPGSLVLVGGDPGIGKSTLLLQTSAKLAEHGQKVLYISGEESVKQTKLRSDRLDIAAKELFVLAETDLDLIE
KAVNEINPSVVIIDSIQTVYRPEVTSAPGSVSQVRECTSHFMRIAKTKGIAIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGERHHTYRILRAVKNRFGSTNEIGVFEMKELGLAEVLNPSEIFLEERSKGVAGSTVVASLEGTRPMLVEIQALVSPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLNVAGGVRLDEPAVDLSVAVSIASSFRDAPTRPTDVIIGEVGLT
GEVRRVSRIDQRIHEAAKLGFERAIIPDKNLGGWTIPKGIEVIGVSTVEETLHYTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=836379 QNH15_RS00565 WP_283891849.1 106689..108065(+) (radA) [Fictibacillus enclensis strain TL11]
ATGGCCAAGAACAAATCTGTTTTTATGTGCCAGGAATGTGGTTATGAATCACCTAAATGGATGGGGAAATGCCCGGGCTG
CCACCAATGGAACACCATGGTGGAAGAAGTCATCAAGAAAGATACCCCAACCAGGGGGTTATCCACCTCTTCCTCATCCG
GCACACAGCAAAAGCCCCAATCCATTGTTTCTGTAAAAAGTGAGCAGGAGCCGCGGATCAATACGCATACAACAGAGCTG
AACCGTGTACTCGGAGGCGGCATTGTACCGGGATCCCTCGTATTGGTTGGCGGTGATCCCGGTATCGGAAAGTCTACCCT
TCTTTTGCAAACTTCTGCTAAATTGGCAGAGCACGGGCAAAAGGTGCTGTATATTTCAGGAGAGGAATCCGTCAAGCAGA
CGAAGCTTCGTTCGGACCGCCTGGATATAGCGGCCAAAGAGCTGTTTGTTTTGGCAGAGACGGACCTGGATCTGATTGAA
AAAGCGGTGAACGAAATTAATCCGTCGGTTGTGATCATTGACTCCATTCAGACGGTTTACCGGCCGGAAGTGACAAGTGC
TCCGGGCAGTGTTTCCCAGGTGAGAGAATGTACTTCGCATTTTATGCGGATCGCCAAAACGAAAGGCATTGCCATTTTTA
TCGTGGGCCATGTGACAAAAGAAGGGGCCATCGCCGGCCCGAGGATGCTTGAGCACATGGTGGATGCTGTGCTTTACTTT
GAAGGAGAGCGCCATCATACGTACCGGATCTTACGGGCGGTTAAAAACCGCTTCGGCTCAACTAATGAAATCGGCGTATT
TGAAATGAAGGAGCTGGGCCTTGCTGAGGTGCTCAATCCGTCGGAAATTTTCCTGGAGGAACGTTCGAAAGGCGTAGCGG
GATCAACTGTTGTTGCCTCATTAGAAGGAACCAGGCCCATGCTTGTAGAAATACAGGCATTAGTATCTCCTACAAGTTTT
GGAAATCCAAGAAGGATGGCTACCGGCATTGACCACAACCGTGTCTCGCTTCTGATGGCGGTTCTTGAAAAAAGGGTCGG
CCTTTTGCTTCAAAACCAGGATGCTTACCTGAATGTTGCTGGAGGAGTAAGGCTGGATGAGCCGGCTGTTGACCTTTCGG
TGGCTGTAAGCATCGCTTCGAGCTTTCGGGATGCGCCCACACGCCCGACTGATGTGATCATTGGCGAGGTGGGATTAACA
GGCGAGGTCCGGCGGGTATCGAGGATTGACCAGCGGATCCATGAAGCAGCCAAGCTGGGTTTTGAGAGGGCCATCATTCC
GGATAAAAACCTTGGGGGCTGGACGATCCCTAAGGGAATTGAGGTTATCGGTGTGTCTACTGTCGAAGAGACATTGCACT
ATACTTTGGGAGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-430)

AAA domain (AAA_25)

(68-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.236

100

0.742
  radA Streptococcus pneumoniae Rx1

61.283

98.69

0.605
  radA Streptococcus pneumoniae D39

61.283

98.69

0.605
  radA Streptococcus pneumoniae R6

61.283

98.69

0.605
  radA Streptococcus pneumoniae TIGR4

61.283

98.69

0.605
  radA Streptococcus mitis NCTC 12261

61.283

98.69

0.605
  radA Streptococcus mitis SK321

61.062

98.69

0.603