Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SJJ41_RS33545 Genome accession   NZ_CP141102
Coordinates   7375671..7376336 (+) Length   221 a.a.
NCBI ID   WP_322986342.1    Uniprot ID   -
Organism   Streptomyces sp. S584     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7370671..7381336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJJ41_RS33525 - 7371485..7372723 (+) 1239 WP_124278496.1 geranylgeranyl reductase family protein -
  SJJ41_RS33530 - 7372851..7373306 (-) 456 WP_322986339.1 nitroreductase family deazaflavin-dependent oxidoreductase -
  SJJ41_RS33535 - 7373433..7374185 (+) 753 WP_322986340.1 TetR/AcrR family transcriptional regulator -
  SJJ41_RS33540 - 7374346..7375674 (+) 1329 WP_322986341.1 sensor histidine kinase -
  SJJ41_RS33545 vraR 7375671..7376336 (+) 666 WP_322986342.1 response regulator transcription factor Regulator
  SJJ41_RS33550 - 7376297..7376599 (-) 303 WP_322986343.1 DUF6332 family protein -
  SJJ41_RS33555 - 7376770..7377171 (+) 402 WP_322986344.1 MarR family transcriptional regulator -
  SJJ41_RS33560 - 7377182..7377934 (-) 753 WP_322986345.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  SJJ41_RS33565 - 7377959..7378327 (-) 369 WP_129260808.1 SCO4225 family membrane protein -
  SJJ41_RS33570 - 7378398..7379630 (-) 1233 WP_322986346.1 MFS transporter -
  SJJ41_RS33575 - 7379752..7380966 (+) 1215 WP_322986347.1 ROK family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23794.57 Da        Isoelectric Point: 4.8750

>NTDB_id=836355 SJJ41_RS33545 WP_322986342.1 7375671..7376336(+) (vraR) [Streptomyces sp. S584]
MIRVLLADDQLLVRAGFRALLDAQPDIEVAGEAADGAEAVRLVRELRPDTVLMDIRMPKQDGLAATRAITGDPALSDVKV
VMLTTFELDEYVFEAIRSGASGFLVKGTEPDELLRAVRAVVDGDALLSPGVTRRLIAEFAARSKEPAAATLLDGLTERER
EVMALVGIGLSNEEIARRLVVSPLTAKTHVSRAMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=836355 SJJ41_RS33545 WP_322986342.1 7375671..7376336(+) (vraR) [Streptomyces sp. S584]
GTGATCCGCGTACTGCTCGCCGACGACCAGTTGCTGGTCCGGGCCGGTTTCCGGGCGCTCCTGGACGCCCAGCCGGACAT
CGAGGTGGCCGGCGAGGCAGCCGACGGGGCGGAGGCCGTACGCCTGGTGCGTGAACTGCGCCCCGACACGGTGCTCATGG
ACATCCGGATGCCGAAGCAGGACGGTCTGGCCGCGACCCGGGCGATCACCGGCGACCCGGCCCTGAGCGACGTGAAGGTG
GTCATGCTCACCACCTTCGAACTCGACGAGTACGTCTTCGAGGCGATCCGGTCGGGAGCCTCCGGCTTCCTCGTCAAGGG
CACCGAACCGGACGAGCTGCTGCGGGCGGTGCGCGCGGTGGTGGACGGGGACGCCCTGCTGTCGCCCGGAGTGACCCGGC
GGCTGATCGCCGAGTTCGCGGCCCGCTCCAAGGAGCCCGCGGCGGCGACGCTCCTGGACGGACTGACCGAACGCGAGCGT
GAGGTCATGGCCCTGGTCGGCATCGGGCTCTCCAACGAGGAGATCGCCCGCAGACTTGTCGTCAGCCCGCTCACCGCCAA
GACTCACGTCAGCCGCGCCATGGTCAAGCTGGGTGCCCGGGACCGGGCCCAACTCGTCGTGCTCGCCTACGAGTCGGGGC
TCGTACGCCCCGGCTGGCTCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.605

97.285

0.376
  degU Bacillus subtilis subsp. subtilis str. 168

36

100

0.367