Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH42_RS18915 Genome accession   NZ_CP126108
Coordinates   3719309..3720991 (-) Length   560 a.a.
NCBI ID   WP_197213549.1    Uniprot ID   -
Organism   Cytobacillus firmus strain SQ11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3714309..3725991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH42_RS18895 (QNH42_18895) - 3716059..3716295 (+) 237 WP_048008222.1 DUF2627 domain-containing protein -
  QNH42_RS18900 (QNH42_18900) - 3716313..3716453 (+) 141 WP_082138922.1 YycC family protein -
  QNH42_RS18905 (QNH42_18905) spo0A 3716736..3717524 (-) 789 WP_048008223.1 sporulation transcription factor Spo0A -
  QNH42_RS18910 (QNH42_18910) spoIVB 3717837..3719126 (-) 1290 WP_163143354.1 SpoIVB peptidase -
  QNH42_RS18915 (QNH42_18915) recN 3719309..3720991 (-) 1683 WP_197213549.1 DNA repair protein RecN Machinery gene
  QNH42_RS18920 (QNH42_18920) argR 3721077..3721526 (-) 450 WP_009332889.1 transcriptional regulator ArgR -
  QNH42_RS18925 (QNH42_18925) - 3721699..3722544 (-) 846 WP_197213547.1 TlyA family RNA methyltransferase -
  QNH42_RS18930 (QNH42_18930) dxs 3722548..3724440 (-) 1893 WP_159344688.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH42_RS18935 (QNH42_18935) - 3724807..3725700 (-) 894 WP_283934933.1 polyprenyl synthetase family protein -
  QNH42_RS18940 (QNH42_18940) xseB 3725703..3725936 (-) 234 WP_048008230.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63215.26 Da        Isoelectric Point: 5.2235

>NTDB_id=836354 QNH42_RS18915 WP_197213549.1 3719309..3720991(-) (recN) [Cytobacillus firmus strain SQ11]
MLNEITIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKAELEGLFILDDPKHPCYKR
AAEFGIDIEDGMIVLRRDISKTGKSICRVNGKLVTISALREIGSSLIDIHGQHEHQELMNETLHLPLLDQFGGTKISASL
SEYQDIYRLYESTLKKLKNLSENEQQMAHRLDLIQFQLDEIQSAQLKLNEDEDLIEEKRKLSNFERIFDSVQSGYNALQG
EQKGLDWIGLVMGYMNDAAELDPSYKEIAENVANSFYLLEDAASSLRNEMDFMEYDPQRLNEIENRLNEINGLKRKYGKT
VEEVLEYAAKIEEEIETLQNKETHIDKLQKEVTALKKDLVVEGEELSKLRRKSALKLTKLIHKELKELYMEKTVFEVRFF
SDPEVLLKNGIDRAEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVSVDSQVLCISHLPQVAAIADTHLFIAKNTNEGRTKTTVKPLNEEEKIKEISRMISGVEITDLTKEHAKELLHMAKQLK

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=836354 QNH42_RS18915 WP_197213549.1 3719309..3720991(-) (recN) [Cytobacillus firmus strain SQ11]
TTGTTAAATGAAATAACGATACGAAATTTTGCTATAATCGAAGCCCTTTCTGTCTCATTTGAAAAGGGCTTAACTGTTTT
AACTGGTGAAACAGGGGCAGGGAAATCCATTATTATTGATGCCATTCACTTGCTGGCTGGAGGCAGGGGATCTGCAGAGT
TTGTCCGGCATGGTGAAGATAAAGCTGAGTTAGAGGGGCTTTTTATCCTGGATGATCCTAAGCACCCTTGCTATAAACGA
GCTGCAGAATTTGGGATAGATATTGAAGATGGAATGATTGTTCTCCGCAGAGATATATCAAAGACAGGAAAAAGCATTTG
CAGAGTGAATGGAAAACTGGTCACTATTTCTGCTTTGAGGGAAATCGGAAGTTCACTTATTGATATACACGGTCAGCACG
AACATCAGGAATTAATGAATGAAACCTTGCATCTTCCTCTTCTCGATCAGTTTGGAGGAACGAAGATTTCTGCTTCCCTT
TCTGAATATCAGGATATCTACAGATTATATGAAAGCACCTTGAAAAAGCTTAAGAATTTAAGCGAGAATGAACAGCAAAT
GGCACACCGGCTTGATTTAATCCAATTTCAGCTTGATGAAATCCAGTCAGCACAGCTGAAATTGAATGAAGATGAGGATC
TGATTGAAGAAAAGAGAAAGCTATCCAATTTTGAACGTATTTTTGACTCAGTTCAGTCTGGCTATAATGCTCTTCAAGGA
GAGCAAAAAGGGCTCGATTGGATTGGGCTGGTTATGGGGTATATGAATGATGCCGCGGAATTGGACCCATCGTATAAAGA
AATAGCGGAAAATGTGGCAAACAGCTTCTATTTGCTTGAAGATGCGGCCAGTTCCCTGCGCAATGAAATGGACTTTATGG
AATATGATCCCCAGAGGCTCAATGAAATCGAAAACAGACTGAATGAAATAAATGGTCTAAAAAGAAAATATGGAAAAACG
GTAGAAGAAGTGCTGGAATACGCAGCAAAAATAGAAGAAGAAATTGAAACCTTGCAAAATAAAGAAACCCATATTGATAA
GCTGCAAAAAGAAGTTACTGCCCTGAAAAAAGACCTTGTGGTTGAAGGGGAAGAACTGAGCAAGCTGCGGAGAAAATCTG
CCCTAAAGCTTACGAAGTTAATTCATAAAGAGCTTAAGGAATTATACATGGAAAAAACAGTTTTTGAGGTAAGATTCTTT
TCTGATCCCGAAGTCCTTCTGAAAAATGGCATTGACAGAGCGGAATTCTATATTTCCACCAATCCGGGAGAACCGCTCAA
GCCTCTGTCTAAGATTGCATCGGGAGGGGAATTATCCCGAATCATGCTTGCCTTGAAGAGTATTTTCTCAAAACATCAAG
GTGTTACAAGTATTATCTTCGATGAAGTGGATACAGGCGTGAGCGGAAGAGTGGCACAAGCTATCGCGGAAAAGATTCAT
CATGTTTCCGTGGATTCACAAGTGCTTTGCATCTCTCACCTGCCACAGGTTGCAGCGATTGCAGATACTCATTTATTTAT
TGCTAAAAACACGAATGAAGGACGGACCAAAACTACAGTGAAGCCTCTGAATGAAGAAGAGAAGATAAAAGAAATCAGCC
GTATGATTTCTGGTGTGGAAATTACCGATTTGACGAAAGAGCATGCAAAAGAGCTGCTGCATATGGCTAAACAGCTGAAA
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.847

100

0.634