Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QNH42_RS01065 Genome accession   NZ_CP126108
Coordinates   187246..188199 (+) Length   317 a.a.
NCBI ID   WP_283935273.1    Uniprot ID   -
Organism   Cytobacillus firmus strain SQ11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182246..193199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH42_RS01045 (QNH42_01045) - 183762..183887 (+) 126 WP_258752018.1 hypothetical protein -
  QNH42_RS01050 (QNH42_01050) glmS 183983..185785 (+) 1803 WP_048008707.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  QNH42_RS01055 (QNH42_01055) - 185994..186437 (+) 444 WP_283935272.1 DUF4275 family protein -
  QNH42_RS01060 (QNH42_01060) - 186582..186971 (+) 390 WP_048008708.1 ribbon-helix-helix protein, CopG family -
  QNH42_RS01065 (QNH42_01065) ceuB 187246..188199 (+) 954 WP_283935273.1 ABC transporter permease Machinery gene
  QNH42_RS01070 (QNH42_01070) - 188189..189142 (+) 954 WP_283935274.1 iron chelate uptake ABC transporter family permease subunit -
  QNH42_RS01075 (QNH42_01075) - 189139..189906 (+) 768 WP_048008711.1 ABC transporter ATP-binding protein -
  QNH42_RS01080 (QNH42_01080) - 190105..191130 (+) 1026 WP_226620301.1 siderophore ABC transporter substrate-binding protein -
  QNH42_RS01085 (QNH42_01085) - 191513..192151 (+) 639 WP_226620300.1 O-methyltransferase -
  QNH42_RS01090 (QNH42_01090) - 192205..193041 (-) 837 WP_226620299.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34663.67 Da        Isoelectric Point: 9.3878

>NTDB_id=836326 QNH42_RS01065 WP_283935273.1 187246..188199(+) (ceuB) [Cytobacillus firmus strain SQ11]
MRLWMLGIAAIVLSFSSLFIGAIDITPKDLLNWESDETHIFLISRIPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALAGTFLFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFLGYEADLL
QNLSSWLMGSFTLIIAGRYELLYVSIPAIILAYLYANKFTVAGMGEDFARNLGLSYKLVLNIGLVLVAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=836326 QNH42_RS01065 WP_283935273.1 187246..188199(+) (ceuB) [Cytobacillus firmus strain SQ11]
ATGAGATTATGGATGTTAGGAATTGCAGCCATTGTTCTGTCTTTTAGCTCGCTGTTTATCGGTGCAATAGATATAACGCC
TAAGGATCTGCTTAATTGGGAATCAGATGAAACACATATCTTCCTTATCAGCCGCATTCCACGTCTATTGGCGATTATTT
TAGCGGGGGCAGGAATGAGTATTGCCGGTTTAATTATGCAGTCTTTAAGCCGCAATAAGTTTGTATCACCAACAACAGCC
GGAACTTTGGATGCAGCAAAACTGGGTATTTTAATTTCCATGCTGTTTTTTACGAATGTCACTTATACACAGCAGGTTAT
TTTTAGCTTTGCCTTTGCTTTGGCAGGTACATTTCTCTTCATGCAGATTTTAGATCGTATAAAATTTAAAGATGTTATTT
TCGTTCCGTTAATCGGAATTATGTATGGAAATATACTATCTTCCATTACAACGTTTCTTGGATATGAAGCTGATCTGCTG
CAAAATCTATCTTCCTGGCTTATGGGAAGTTTTACTTTGATTATTGCCGGCCGTTATGAGCTTTTATATGTTAGTATTCC
CGCTATTATTCTGGCGTATCTATATGCGAATAAATTTACGGTTGCCGGAATGGGTGAGGATTTTGCAAGAAATCTTGGCT
TAAGCTATAAGCTGGTACTGAATATTGGCCTGGTCCTTGTTGCGGTTATCTCAACAACAGTGGTTCTTACTGTCGGAGTT
ATTCCATTTTTAGGACTAATCGTTCCCAATATTGTCTCCTTATATTTAGGTGACAACCTGCGCAAAACAATTCCGCATAC
AGCGGTGCTGGGAATTGTCTTCCTATTAATATGTGACATTTTGGGGCGCATCATCATTCATCCTTATGAAATTCCGGTTA
ATGTAACCGTGGCAGTAATAGGCAGTGCTATCTTCTTAACGATGCTGCTAAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.333

94.637

0.524