Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SJJ41_RS12435 Genome accession   NZ_CP141102
Coordinates   2775171..2776229 (-) Length   352 a.a.
NCBI ID   WP_147983760.1    Uniprot ID   A0ABU8A8E2
Organism   Streptomyces sp. S584     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2770171..2781229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJJ41_RS12415 - 2770244..2771236 (-) 993 WP_124274532.1 ABC transporter permease -
  SJJ41_RS12420 - 2771229..2772152 (-) 924 WP_322983816.1 ABC transporter permease -
  SJJ41_RS12425 - 2772242..2773870 (-) 1629 WP_322983817.1 peptide ABC transporter substrate-binding protein -
  SJJ41_RS12430 - 2774036..2775178 (-) 1143 WP_124274529.1 ABC transporter ATP-binding protein -
  SJJ41_RS12435 amiE 2775171..2776229 (-) 1059 WP_147983760.1 ABC transporter ATP-binding protein Regulator
  SJJ41_RS12440 - 2776241..2777182 (-) 942 WP_124274528.1 ABC transporter permease -
  SJJ41_RS12445 - 2777175..2778104 (-) 930 WP_124274527.1 ABC transporter permease -
  SJJ41_RS12450 - 2778225..2779850 (-) 1626 WP_124274526.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38524.62 Da        Isoelectric Point: 6.8276

>NTDB_id=836310 SJJ41_RS12435 WP_147983760.1 2775171..2776229(-) (amiE) [Streptomyces sp. S584]
MTIIDKTADVPAPRGSKDESGPLLEVRDLHVEFHTRDGVAKAVNGVNYSVSAGETLAVLGESGSGKSVTAQAIMGILDMP
PGRIPKGEIFFRGQDMLKMSNEERRQIRGQKIAMIFQDALSSLNPVLSVGYQLGEMFRVHQGLSKKEAKAKAIALMDRVR
IPAAKERVNDYPHMFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQRDFNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHEIYKRPAHPYTKGLLESIPRLDQKGQELYAIKGLPPNLLHVPSGCAFNPRCTMAQDICRT
DIPALRPVTEQDGTELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=836310 SJJ41_RS12435 WP_147983760.1 2775171..2776229(-) (amiE) [Streptomyces sp. S584]
ATGACCATCATCGACAAGACGGCGGATGTTCCTGCTCCGCGTGGTTCGAAGGACGAGAGCGGTCCGCTGCTCGAAGTCCG
CGATCTGCACGTGGAGTTCCACACCCGTGACGGCGTCGCCAAGGCCGTCAACGGAGTCAACTACAGCGTCAGCGCCGGCG
AGACCCTCGCCGTGCTCGGCGAGTCCGGTTCCGGCAAGTCCGTGACCGCTCAGGCGATCATGGGCATCCTGGACATGCCC
CCGGGGCGCATCCCCAAGGGCGAGATCTTCTTCCGCGGCCAGGACATGCTCAAGATGTCCAACGAGGAGCGCCGGCAGAT
CCGCGGCCAGAAGATCGCCATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCGGTGCTCTCCGTGGGCTACCAGCTCG
GCGAGATGTTCCGCGTGCACCAGGGCCTCTCCAAGAAGGAGGCCAAGGCCAAGGCCATCGCGCTGATGGACCGCGTGCGC
ATCCCGGCGGCCAAGGAGCGGGTCAACGACTACCCGCACATGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCGAT
GGCGCTGGCCCTGGAGCCCGACCTGATCATCGCGGACGAGCCCACCACGGCGCTCGACGTGACCGTCCAGGCGCAGGTGA
TGGACCTGCTCGCGGAGCTCCAGCGCGACTTCAACATGGGCCTGATCCTGATCACGCACGACCTCGGCGTGGTCGCCGAC
GTCGCCGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGACCGCTCCGGTCCACGAGATCTACAAGCGCCCCGC
GCACCCGTACACCAAGGGCCTCCTGGAGTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGCC
TGCCGCCCAACCTGCTGCACGTGCCGTCCGGCTGCGCCTTCAACCCGCGCTGCACGATGGCGCAGGACATCTGCCGTACG
GACATCCCGGCGCTGCGCCCGGTGACCGAGCAGGACGGCACCGAGCTGGTCGGCCGCGGCAGCGCCTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)

ABC transporter (ABC_tran)

(44-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

52.027

84.091

0.437
  amiE Streptococcus thermophilus LMG 18311

51.351

84.091

0.432
  amiE Streptococcus thermophilus LMD-9

51.351

84.091

0.432
  oppD Streptococcus mutans UA159

48.377

87.5

0.423