Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SJJ41_RS12410 Genome accession   NZ_CP141102
Coordinates   2769253..2770230 (-) Length   325 a.a.
NCBI ID   WP_322983815.1    Uniprot ID   -
Organism   Streptomyces sp. S584     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2764253..2775230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJJ41_RS12390 - 2764293..2764487 (-) 195 WP_014154257.1 hypothetical protein -
  SJJ41_RS12395 - 2764654..2766780 (+) 2127 WP_322983812.1 alpha/beta fold hydrolase -
  SJJ41_RS12400 - 2766790..2767908 (-) 1119 WP_322983813.1 hypothetical protein -
  SJJ41_RS12405 - 2768112..2769263 (-) 1152 WP_322983814.1 ABC transporter ATP-binding protein -
  SJJ41_RS12410 amiE 2769253..2770230 (-) 978 WP_322983815.1 ABC transporter ATP-binding protein Regulator
  SJJ41_RS12415 - 2770244..2771236 (-) 993 WP_124274532.1 ABC transporter permease -
  SJJ41_RS12420 - 2771229..2772152 (-) 924 WP_322983816.1 ABC transporter permease -
  SJJ41_RS12425 - 2772242..2773870 (-) 1629 WP_322983817.1 peptide ABC transporter substrate-binding protein -
  SJJ41_RS12430 - 2774036..2775178 (-) 1143 WP_124274529.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35777.54 Da        Isoelectric Point: 6.6593

>NTDB_id=836309 SJJ41_RS12410 WP_322983815.1 2769253..2770230(-) (amiE) [Streptomyces sp. S584]
MLLEVRDLHVEFHTRDGVAKAVNGVNYSVSEGETLAVLGESGSGKSVTAQAIMGILDMPPGRISGGEILFKDRDLLKLKN
EERRRIRGQEMAMIFQDALSSLNPVLSVGAQLGEMFVVHRGMSRGDAKAKAIELMDRVRIPAARQRVGDFPHQFSGGMRQ
RIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVETSPVHP
IYEAPAHPYTKGLLRSIPRLDQKGQELYAIKGLPPNLLHIPPGCAFHPRCPLAQAVCRTDVPPLYTVDEERRSACHFWKE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=836309 SJJ41_RS12410 WP_322983815.1 2769253..2770230(-) (amiE) [Streptomyces sp. S584]
ATGTTGCTCGAAGTGCGCGATCTGCACGTGGAGTTCCACACCCGGGACGGAGTGGCCAAGGCCGTCAACGGGGTCAACTA
CTCGGTGTCCGAGGGCGAGACCCTCGCCGTGCTCGGCGAGTCCGGCTCGGGCAAGTCCGTCACCGCCCAGGCGATCATGG
GCATCCTCGACATGCCGCCCGGGCGGATCAGCGGGGGCGAGATCCTCTTCAAGGACCGCGACCTGCTGAAGCTCAAGAAC
GAGGAGCGCCGGCGGATCCGCGGCCAGGAGATGGCCATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCCGTCCTCAG
CGTGGGCGCGCAGCTCGGCGAGATGTTCGTCGTGCACCGGGGGATGTCACGGGGCGACGCCAAGGCCAAGGCGATCGAGC
TGATGGACCGGGTGCGCATCCCGGCGGCCCGGCAACGGGTGGGCGACTTCCCCCACCAGTTCTCCGGCGGTATGCGCCAG
CGCATCATGATCGCGATGGCGCTGGCCCTGGAGCCCGACCTGATCATCGCCGACGAGCCGACCACCGCCCTCGACGTGAC
CGTCCAGGCCCAGGTGATGGACCTGCTCGCGGAGCTCCAGCGCGAGCTCAACATGGGCCTGATCCTGATCACGCACGACC
TCGGCGTGGTCGCCGACGTCGCCGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGACCTCACCCGTCCACCCG
ATCTACGAGGCGCCCGCCCACCCGTACACCAAGGGCCTGCTGAGGTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
CTACGCGATCAAGGGCCTGCCGCCCAACCTGCTGCACATCCCGCCCGGCTGCGCCTTCCACCCGCGCTGCCCCCTGGCCC
AGGCCGTGTGCCGTACGGACGTGCCCCCGCTCTACACCGTGGACGAGGAACGCCGGAGCGCCTGCCACTTCTGGAAGGAG
ACGCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

48.065

95.385

0.458
  amiE Streptococcus thermophilus LMG 18311

47.419

95.385

0.452
  amiE Streptococcus thermophilus LMD-9

47.419

95.385

0.452
  oppD Streptococcus mutans UA159

46.178

96.615

0.446