Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SJJ41_RS10730 Genome accession   NZ_CP141102
Coordinates   2411016..2411834 (-) Length   272 a.a.
NCBI ID   WP_322983609.1    Uniprot ID   -
Organism   Streptomyces sp. S584     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2406016..2416834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJJ41_RS10705 - 2406669..2407091 (-) 423 WP_322983606.1 RidA family protein -
  SJJ41_RS10710 - 2407088..2408215 (-) 1128 WP_124274791.1 mandelate racemase/muconate lactonizing enzyme family protein -
  SJJ41_RS10715 - 2408295..2409074 (-) 780 WP_322983607.1 creatininase family protein -
  SJJ41_RS10720 - 2409116..2410075 (+) 960 WP_388736932.1 ROK family protein -
  SJJ41_RS10725 - 2410090..2411019 (-) 930 WP_322983608.1 ATP-binding cassette domain-containing protein -
  SJJ41_RS10730 amiE 2411016..2411834 (-) 819 WP_322983609.1 ABC transporter ATP-binding protein Regulator
  SJJ41_RS10735 - 2411831..2412745 (-) 915 WP_322983610.1 ABC transporter permease -
  SJJ41_RS10740 - 2412742..2413740 (-) 999 WP_124274785.1 ABC transporter permease -
  SJJ41_RS10745 - 2413737..2415311 (-) 1575 WP_322983611.1 ABC transporter substrate-binding protein -
  SJJ41_RS10750 - 2415366..2416229 (+) 864 WP_322983612.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 29394.56 Da        Isoelectric Point: 6.6642

>NTDB_id=836302 SJJ41_RS10730 WP_322983609.1 2411016..2411834(-) (amiE) [Streptomyces sp. S584]
MTSTTAASPVLEIRDLRVDFRLAATTVHAVRGVSFSVAPGETLAVVGESGSGKSATALSALRLNPEPPCVYAGGHILLDG
KDLLTRGERELGRIRGADLSMIFQDPMTSLDPLQRIGSQVAEVLRHHGGHSRAEARAAALSALDEVGIPDPERRYRQYPH
ELSGGLRQRVMIAAALVARPRVLIADEPTTALDVTVQRQILDLLVRLQQRHGMAVVLITHDLGVVAETADRVVVMHRGEA
VETGDVHDVFARPEDPYTRRLLDATPRLETAG

Nucleotide


Download         Length: 819 bp        

>NTDB_id=836302 SJJ41_RS10730 WP_322983609.1 2411016..2411834(-) (amiE) [Streptomyces sp. S584]
ATGACCTCCACCACCGCCGCATCACCCGTCCTGGAGATCCGCGACCTGCGCGTCGACTTCCGCCTCGCCGCCACCACCGT
CCACGCGGTCCGCGGAGTCAGCTTCTCCGTCGCACCCGGCGAGACCCTCGCCGTCGTCGGCGAATCGGGCAGCGGCAAGT
CCGCGACCGCGCTGTCCGCGCTCCGGCTCAACCCCGAGCCGCCCTGCGTCTACGCCGGCGGGCACATCCTGCTCGACGGG
AAGGACCTGCTGACCCGCGGCGAACGCGAACTCGGGCGCATCAGGGGCGCCGACCTGTCCATGATCTTCCAGGACCCGAT
GACCAGCCTCGACCCGCTGCAGCGCATCGGCAGCCAGGTCGCCGAGGTCCTCCGCCACCACGGCGGCCACAGCCGGGCCG
AAGCCAGGGCGGCGGCGCTGTCCGCCCTCGACGAGGTGGGCATCCCGGACCCCGAGCGCCGCTACCGCCAGTACCCCCAC
GAGCTGTCCGGCGGACTGCGCCAGCGCGTCATGATCGCCGCCGCGCTCGTCGCCCGCCCCCGCGTCCTCATCGCCGACGA
ACCCACCACCGCGCTCGACGTCACCGTGCAGCGCCAGATCCTCGACCTCCTCGTCCGGCTCCAGCAACGCCACGGCATGG
CCGTCGTCCTCATCACCCACGACCTCGGTGTCGTCGCGGAGACCGCCGACCGTGTGGTGGTCATGCACCGCGGCGAGGCC
GTCGAGACCGGGGACGTCCACGACGTGTTCGCCCGCCCCGAGGACCCGTACACCCGCCGACTGCTCGACGCGACGCCCCG
ACTGGAGACCGCAGGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(31-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

48.872

97.794

0.478
  amiE Streptococcus thermophilus LMG 18311

48.496

97.794

0.474
  amiE Streptococcus thermophilus LMD-9

48.496

97.794

0.474
  oppD Streptococcus mutans UA159

48.473

96.324

0.467