Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SJJ41_RS10175 Genome accession   NZ_CP141102
Coordinates   2280957..2281943 (-) Length   328 a.a.
NCBI ID   WP_124274848.1    Uniprot ID   A0ABU8A8I1
Organism   Streptomyces sp. S584     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2275957..2286943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJJ41_RS10165 - 2277583..2279460 (-) 1878 WP_322983538.1 discoidin domain-containing protein -
  SJJ41_RS10170 - 2279491..2280903 (-) 1413 WP_322983539.1 GH1 family beta-glucosidase -
  SJJ41_RS10175 amiE 2280957..2281943 (-) 987 WP_124274848.1 ABC transporter ATP-binding protein Regulator
  SJJ41_RS10180 - 2281940..2282998 (-) 1059 WP_241195110.1 ABC transporter permease -
  SJJ41_RS10185 - 2283004..2283984 (-) 981 WP_147983935.1 ABC transporter permease -
  SJJ41_RS10190 - 2283981..2285036 (-) 1056 WP_322983540.1 ABC transporter ATP-binding protein -
  SJJ41_RS10195 - 2285055..2286734 (-) 1680 WP_124274845.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 35684.96 Da        Isoelectric Point: 6.6636

>NTDB_id=836299 SJJ41_RS10175 WP_124274848.1 2280957..2281943(-) (amiE) [Streptomyces sp. S584]
MTAEPILTISGLNVDYGTGTSGVRALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGDVHYHRPGGES
VDILSLSPDELRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLTAHRPGMRAAERTARAEELLNLVGISADRLAAYPHQ
LSGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILRKLVELRERLSFSVVFITHDISLLIEFSDRIAIMYGGRIV
EQAGAAEIYRDPRHPYSEGLLHSFPALHGPRRELTGIPGSPPHLSAMPAGCAFHPRCGKAFEPCSQRVPVLAAPDAGQDR
EVACWLHH

Nucleotide


Download         Length: 987 bp        

>NTDB_id=836299 SJJ41_RS10175 WP_124274848.1 2280957..2281943(-) (amiE) [Streptomyces sp. S584]
ATGACCGCCGAGCCGATCCTCACCATCAGCGGCCTGAACGTCGACTACGGCACCGGCACGAGCGGCGTCCGCGCACTGCG
CGACATCGACCTCACCCTGCACCGCGGCGAAGTCCTCGGCCTCGCGGGGGAGTCCGGGTCGGGCAAGTCCACGCTGGCGT
ACGCCGTCACCCGGCTGCTCTCCCCGCCGGGGGTGATCACCGGCGGCGACGTCCATTACCACCGGCCGGGCGGCGAGAGC
GTCGACATCCTCTCCCTCAGCCCGGACGAGCTGCGCGCCTTCCGCTGGCAGGAGCTGTCGATCGTGTTCCAGGGGGCGAT
GAACTCGCTCAACCCGGTGCACACCGTCCACAGCCAGCTCACCGACGTGCTCACCGCACACCGCCCCGGCATGCGGGCCG
CCGAGCGCACCGCCCGCGCCGAGGAGCTGCTCAACCTCGTCGGCATCTCCGCCGACCGGCTCGCCGCCTACCCGCACCAG
CTCTCCGGCGGCATGCGCCAGCGCGTGATGATCGCGATGGCGCTCGCCCTGGAACCCGAGATCGTCATCATGGACGAGCC
CACCACCGCGCTCGACGTCGTCATGCAGCGGCAGATCCTGCGCAAGCTGGTGGAACTGCGCGAACGCCTCTCGTTCTCGG
TCGTGTTCATCACCCACGACATCTCGCTGCTGATCGAGTTCTCCGACCGCATCGCGATCATGTACGGCGGCCGGATCGTG
GAGCAGGCGGGAGCCGCCGAGATCTACCGCGACCCCCGCCACCCCTACAGCGAGGGGCTGCTGCACTCCTTCCCCGCGCT
GCACGGCCCCCGCCGGGAGCTCACCGGCATCCCCGGCTCGCCCCCGCACCTGTCCGCCATGCCCGCCGGCTGCGCCTTCC
ACCCCCGCTGCGGCAAGGCCTTCGAGCCGTGCTCCCAGCGGGTCCCGGTCCTCGCCGCGCCGGACGCCGGCCAGGACCGC
GAGGTCGCCTGCTGGCTGCACCACTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(240-304)

ABC transporter (ABC_tran)

(26-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

38.65

99.39

0.384
  amiE Streptococcus thermophilus LMD-9

38.65

99.39

0.384
  amiE Streptococcus salivarius strain HSISS4

38.65

99.39

0.384
  oppD Streptococcus mutans UA159

37.082

100

0.372