Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH17_RS21520 Genome accession   NZ_CP126107
Coordinates   4360223..4361941 (-) Length   572 a.a.
NCBI ID   WP_283875044.1    Uniprot ID   A0AA95M1Y3
Organism   Neobacillus sp. SuZ13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4355223..4366941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH17_RS21505 (QNH17_21505) - 4356454..4357434 (-) 981 WP_283875042.1 tyrosine-type recombinase/integrase -
  QNH17_RS21510 (QNH17_21510) spo0A 4357592..4358383 (-) 792 WP_144547618.1 sporulation transcription factor Spo0A -
  QNH17_RS21515 (QNH17_21515) spoIVB 4358761..4360050 (-) 1290 WP_283875043.1 SpoIVB peptidase -
  QNH17_RS21520 (QNH17_21520) recN 4360223..4361941 (-) 1719 WP_283875044.1 DNA repair protein RecN Machinery gene
  QNH17_RS21525 (QNH17_21525) argR 4361957..4362406 (-) 450 WP_026563645.1 transcriptional regulator ArgR -
  QNH17_RS21530 (QNH17_21530) - 4362568..4363407 (-) 840 WP_144547621.1 TlyA family RNA methyltransferase -
  QNH17_RS21535 (QNH17_21535) dxs 4363411..4365306 (-) 1896 WP_283875046.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH17_RS21540 (QNH17_21540) - 4365495..4366388 (-) 894 WP_283875047.1 polyprenyl synthetase family protein -
  QNH17_RS21545 (QNH17_21545) - 4366392..4366625 (-) 234 WP_283875048.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64567.35 Da        Isoelectric Point: 5.1509

>NTDB_id=836299 QNH17_RS21520 WP_283875044.1 4360223..4361941(-) (recN) [Neobacillus sp. SuZ13]
MLAELSIKNFAIIENLSVTFSKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEERAEIEGLFQLEDSNHPVISK
ALEFGIDVDEGMVILRRDISHSGKSICRVNGKLVTISTLREIGSTLVDIHGQHEHQELMDESRHLTLLDQFGADDIYPSQ
GEYLQVFRRYEQTLQRLKALSENDQQTAHRLDLISFQLDEIQNANLKINEDEELFEEKRKLNNFERVFEALQSSHTALQG
EQKGLDWISMVMGHLEDAASIDSAYKDIYEAVSNSYYQLEDAARSLRTELDALEFDPQRLHEIEDRLNEINRLKRKYGKT
IDEILEYAGKIEEEIETLQNKETHISELEKELASIKKDLMLEAKQLTEIRLKWADKLTKLIHKELKELYMEKTVFEIRFE
SNTMQFTKNGVDHVEFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSQHQGVTSIIFDEVDTGVSGRVAQSIAEKIY
KVASLSQVLCISHLPQVAAMADTHLFISKVIKGGRTKTSVTPLQLEDKINEIGRMISGSEITDLTKKHAEELLYLAAESK
KSGSGALTRLNR

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=836299 QNH17_RS21520 WP_283875044.1 4360223..4361941(-) (recN) [Neobacillus sp. SuZ13]
TTGTTAGCAGAATTATCTATTAAAAACTTCGCTATTATCGAAAACTTGTCTGTAACTTTTTCGAAGGGATTAACGGTTTT
AACGGGAGAGACTGGGGCAGGAAAATCAATCATTATTGATGCCATTCACTTATTAGTTGGCGGGAGAGGATCTGCAGAAT
TTGTCCGGCATGGGGAAGAGAGAGCCGAAATTGAAGGACTTTTCCAGCTAGAAGATAGTAATCATCCTGTCATTTCTAAA
GCTTTAGAATTTGGAATCGACGTTGATGAAGGAATGGTTATTTTACGAAGAGATATTTCCCATTCGGGTAAAAGTATTTG
CCGGGTGAATGGGAAGTTAGTGACGATTTCCACACTTAGGGAAATTGGGTCAACACTGGTTGATATTCACGGACAGCATG
AGCATCAAGAATTAATGGATGAGTCGAGACACTTAACATTGCTTGATCAATTTGGTGCAGATGATATTTACCCTTCCCAA
GGAGAATACCTGCAAGTTTTTCGACGCTATGAGCAAACATTACAAAGGTTAAAAGCATTAAGTGAAAATGACCAGCAGAC
GGCCCACCGGCTTGATCTCATTTCATTTCAATTGGATGAAATCCAAAATGCAAATTTAAAGATTAATGAAGATGAAGAAC
TTTTTGAAGAAAAAAGAAAACTAAATAATTTTGAACGGGTGTTTGAAGCCCTGCAATCGAGTCATACGGCTTTACAGGGG
GAACAAAAGGGACTTGATTGGATTAGTATGGTCATGGGGCATCTTGAGGATGCTGCTTCTATTGATAGCGCGTATAAGGA
CATATACGAAGCTGTATCAAATAGCTATTACCAATTGGAGGATGCTGCACGATCCTTAAGAACTGAATTAGATGCATTGG
AGTTCGATCCGCAGCGATTGCATGAAATTGAAGATCGCCTAAATGAAATAAATCGTCTTAAACGAAAATACGGTAAAACA
ATTGATGAAATATTAGAATACGCAGGGAAAATTGAAGAGGAAATTGAAACATTACAAAATAAAGAAACGCATATAAGCGA
ATTAGAAAAAGAATTAGCCTCGATAAAAAAAGACTTAATGCTTGAAGCAAAACAGTTAACAGAAATCCGTCTGAAATGGG
CAGATAAACTTACAAAGTTAATACATAAAGAGCTAAAAGAATTGTATATGGAGAAAACCGTTTTTGAAATTCGCTTTGAA
TCTAATACCATGCAGTTTACCAAAAATGGAGTGGATCATGTCGAATTTTATATTTCCACAAATCCTGGTGAGCCATTAAA
GCCCCTGTCAAAAGTTGCATCTGGAGGGGAATTATCACGAATTATGCTGGCTCTAAAAAGTATTTTCTCCCAGCATCAAG
GTGTGACATCGATTATTTTTGATGAAGTTGATACAGGGGTCAGCGGCAGAGTGGCTCAGTCAATTGCCGAGAAAATCTAT
AAGGTGGCAAGTCTTTCCCAGGTGTTATGTATTTCGCATTTGCCACAGGTTGCTGCAATGGCCGATACCCACTTGTTTAT
TTCCAAGGTTATTAAAGGTGGAAGAACAAAGACGTCTGTAACTCCTTTGCAGCTTGAAGATAAAATCAATGAAATTGGCA
GGATGATATCTGGATCTGAAATAACCGATCTCACTAAAAAACATGCTGAAGAATTATTATATTTAGCCGCAGAGAGTAAG
AAAAGTGGAAGCGGAGCACTGACACGACTTAATCGTTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.485

100

0.61