Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH17_RS00525 Genome accession   NZ_CP126107
Coordinates   102107..103489 (+) Length   460 a.a.
NCBI ID   WP_283876941.1    Uniprot ID   A0AA95RZR4
Organism   Neobacillus sp. SuZ13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 97107..108489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH17_RS00505 (QNH17_00505) - 97334..97795 (+) 462 WP_026565491.1 CtsR family transcriptional regulator -
  QNH17_RS00510 (QNH17_00510) - 97821..98369 (+) 549 WP_283876938.1 UvrB/UvrC motif-containing protein -
  QNH17_RS00515 (QNH17_00515) - 98371..99441 (+) 1071 WP_283876939.1 protein arginine kinase -
  QNH17_RS00520 (QNH17_00520) clpC 99459..101900 (+) 2442 WP_283876940.1 ATP-dependent protease ATP-binding subunit ClpC -
  QNH17_RS00525 (QNH17_00525) radA 102107..103489 (+) 1383 WP_283876941.1 DNA repair protein RadA Machinery gene
  QNH17_RS00530 (QNH17_00530) disA 103493..104566 (+) 1074 WP_144555586.1 DNA integrity scanning diadenylate cyclase DisA -
  QNH17_RS00535 (QNH17_00535) - 104755..105843 (+) 1089 WP_283876942.1 PIN/TRAM domain-containing protein -
  QNH17_RS00540 (QNH17_00540) ispD 105865..106569 (+) 705 WP_283876943.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNH17_RS00545 (QNH17_00545) ispF 106676..107158 (+) 483 WP_283876945.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49847.36 Da        Isoelectric Point: 7.6847

>NTDB_id=836274 QNH17_RS00525 WP_283876941.1 102107..103489(+) (radA) [Neobacillus sp. SuZ13]
MAKRKTKFMCQACGYESPKWMGKCPGCGEWNKMVEEVEVTGTARRGAFAHSQGGAGLLSKPMPINSIEMENEPRILTDLN
ELNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLANKGNQVLYISGEESLRQTKLRAERLGISSENLLVYSETNLEE
INRTIDSTNPSFVIIDSIQTVFHPDVTSAPGSVSQVRECTSELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMKELGLEEVANPSEIFLEERSRGAAGSTVVASMEGTRPVLVEIQALISPT
SFGNPRRMATGIDHNRVPLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDKPTRPTDCIIGEVG
LTGEVRRVSRIEQRVQEAAKLGFERVILPANNLSGWKGPRGVELIGVSNVSEALKAALGG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=836274 QNH17_RS00525 WP_283876941.1 102107..103489(+) (radA) [Neobacillus sp. SuZ13]
ATGGCAAAACGAAAGACGAAGTTTATGTGTCAGGCTTGCGGATATGAATCGCCCAAGTGGATGGGGAAATGTCCTGGCTG
TGGTGAATGGAATAAGATGGTGGAGGAAGTGGAAGTGACTGGTACCGCGAGGAGAGGTGCATTTGCCCATTCTCAAGGCG
GAGCAGGACTGTTATCCAAACCGATGCCGATCAATTCAATTGAAATGGAAAATGAACCGCGGATTCTAACGGATTTAAAC
GAATTAAACCGTGTCCTTGGGGGCGGTGTGGTAAAGGGTTCTTTAGTCCTGATTGGCGGAGACCCTGGAATTGGGAAGTC
AACGCTTCTTTTGCAGGTATCCTCCCAACTTGCAAATAAAGGAAATCAGGTTTTATACATATCTGGTGAGGAATCTTTAC
GGCAAACTAAACTTCGTGCGGAGCGATTAGGAATATCTTCTGAAAATCTCCTCGTTTATTCTGAAACGAATCTTGAAGAA
ATCAACCGGACCATTGATAGTACCAATCCTAGCTTTGTCATTATAGATTCAATCCAGACGGTCTTTCACCCAGATGTAAC
AAGCGCACCGGGAAGTGTTTCACAGGTTCGTGAGTGTACCTCGGAATTAATGAGAATTGGGAAAACGAAGGGGATTGCGA
TCTTTATTGTTGGACACGTAACAAAAGAAGGGTCAATTGCTGGTCCAAGGCTGTTAGAGCATATGGTGGATACTGTTCTC
TATTTTGAAGGAGAGAGACACCATACCTATCGGATTCTGCGTGCAGTTAAAAACCGTTTTGGTTCAACCAATGAAATGGG
AATTTTTGAAATGAAGGAACTGGGCCTAGAAGAAGTAGCCAATCCCTCTGAAATCTTTCTAGAAGAGCGTTCACGGGGTG
CAGCTGGCTCTACGGTGGTTGCATCGATGGAAGGGACAAGACCAGTCCTTGTCGAAATTCAAGCGTTAATTTCCCCTACC
AGTTTTGGGAATCCAAGAAGAATGGCCACTGGAATTGACCACAATCGTGTGCCGCTTCTGATGGCGGTATTAGAAAAGCG
AGTTGGGATGCTTCTCCAGAACCAAGATGCCTATTTAAAAGTTGCTGGCGGGGTGAAATTGGACGAGCCAGCCATTGATT
TGGCTGTAGCTGTCAGTATTGCTTCGAGCTTTAGAGATAAACCAACAAGGCCGACGGACTGCATTATTGGTGAAGTCGGT
TTAACAGGGGAAGTAAGAAGGGTATCAAGAATTGAGCAGCGTGTCCAAGAAGCGGCCAAGCTTGGTTTTGAGCGAGTCAT
TCTGCCCGCTAATAATCTTAGCGGCTGGAAGGGACCAAGGGGAGTCGAACTCATTGGGGTATCGAATGTAAGTGAAGCAT
TGAAAGCAGCGTTGGGAGGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-224)

Subunit ChlI of Mg-chelatase (ChlI)

(366-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.44

100

0.776
  radA Streptococcus mitis NCTC 12261

62.309

99.783

0.622
  radA Streptococcus pneumoniae Rx1

62.309

99.783

0.622
  radA Streptococcus pneumoniae D39

62.309

99.783

0.622
  radA Streptococcus pneumoniae R6

62.309

99.783

0.622
  radA Streptococcus pneumoniae TIGR4

62.309

99.783

0.622
  radA Streptococcus mitis SK321

62.309

99.783

0.622