Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   U8P28_RS20720 Genome accession   NZ_CP141100
Coordinates   4208335..4209561 (+) Length   408 a.a.
NCBI ID   WP_001161828.1    Uniprot ID   -
Organism   Escherichia coli strain KE40     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4203335..4214561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8P28_RS20705 (U8P28_20705) - 4203850..4205526 (+) 1677 WP_001329578.1 polysaccharide biosynthesis/export family protein -
  U8P28_RS20710 (U8P28_20710) kdsB 4205536..4206276 (+) 741 WP_000030761.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U8P28_RS20715 (U8P28_20715) - 4206273..4208300 (+) 2028 WP_227269033.1 capsular polysaccharide biosynthesis protein -
  U8P28_RS20720 (U8P28_20720) kpsS 4208335..4209561 (+) 1227 WP_001161828.1 capsule biosynthesis protein Regulator
  U8P28_RS20725 (U8P28_20725) - 4209717..4210493 (+) 777 WP_001513438.1 ABC transporter permease -
  U8P28_RS20730 (U8P28_20730) - 4210490..4211161 (+) 672 WP_000590810.1 ABC transporter ATP-binding protein -
  U8P28_RS20735 (U8P28_20735) - 4211165..4212256 (+) 1092 WP_016239079.1 Stealth CR1 domain-containing protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 48551.90 Da        Isoelectric Point: 10.0609

>NTDB_id=836260 U8P28_RS20720 WP_001161828.1 4208335..4209561(+) (kpsS) [Escherichia coli strain KE40]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRNRQYQAYNQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWNEARCWVRAYWRKQLYRVTQRNVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNSLYDIVDLTYQGTLDDFWLTKFKPDIKLFKKFKEYLLFKTQINHVFYGNEKINKSINI
NSFIGSHK

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=836260 U8P28_RS20720 WP_001161828.1 4208335..4209561(+) (kpsS) [Escherichia coli strain KE40]
ATGCAAGGTAATGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTTGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTGTTCAACGGCGGTGATCGTTTTTACTGCC
GCAATCGACAATACCAGGCTTACAACCAAACGCCGAAAGAATTTCCCGGTTGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTACACAAAGAAGCAAAACGGTGGGCTAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCAC
TACCGCGCGATCCTGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGAATGAGGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAGGGTAACACAGCGTA
ATGTATTGCCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGAGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
GAGTTATTTAGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTAAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAGCCACTGAAAGTTATGGGAAATTCTCTTTATGATAT
CGTTGACTTAACATACCAAGGAACATTAGATGACTTCTGGTTAACAAAATTCAAACCAGACATAAAGTTGTTTAAAAAAT
TTAAAGAGTATTTATTGTTTAAAACACAAATAAATCATGTTTTTTATGGAAACGAGAAAATAAATAAGAGCATAAATATC
AATAGTTTTATTGGTTCACACAAATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.487

95.588

0.377