Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JN439_RS01955 Genome accession   NZ_AP024136
Coordinates   400384..401823 (+) Length   479 a.a.
NCBI ID   WP_041211850.1    Uniprot ID   A0A2L0TRY9
Organism   Aeromonas caviae strain KAM329     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395384..406823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN439_RS01925 (KAM329_003690) mlaF 395962..396762 (-) 801 WP_069785529.1 phospholipid ABC transporter ATP-binding protein MlaF -
  JN439_RS01930 (KAM329_003700) - 396969..397964 (+) 996 WP_029314845.1 KpsF/GutQ family sugar-phosphate isomerase -
  JN439_RS01935 (KAM329_003710) kdsC 397964..398518 (+) 555 WP_041211851.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  JN439_RS01940 (KAM329_003720) lptC 398515..399075 (+) 561 WP_039040473.1 LPS export ABC transporter periplasmic protein LptC -
  JN439_RS01945 (KAM329_003730) lptA 399062..399580 (+) 519 WP_202211912.1 lipopolysaccharide transport periplasmic protein LptA -
  JN439_RS01950 (KAM329_003740) lptB 399593..400318 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  JN439_RS01955 (KAM329_003750) rpoN/rpoN1 400384..401823 (+) 1440 WP_041211850.1 RNA polymerase factor sigma-54 Machinery gene
  JN439_RS01960 (KAM329_003760) hpf 401844..402131 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  JN439_RS01965 (KAM329_003770) ptsN 402134..402580 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JN439_RS01970 (KAM329_003780) rapZ 402621..403487 (+) 867 WP_010675869.1 RNase adapter RapZ -
  JN439_RS01975 (KAM329_003790) npr 403508..403780 (+) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  JN439_RS01980 (KAM329_003800) - 403796..405700 (-) 1905 WP_202211757.1 BglG family transcription antiterminator -
  JN439_RS01985 (KAM329_003810) dagF 405804..406544 (-) 741 WP_171864964.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53731.54 Da        Isoelectric Point: 4.3728

>NTDB_id=83625 JN439_RS01955 WP_041211850.1 400384..401823(+) (rpoN/rpoN1) [Aeromonas caviae strain KAM329]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQAETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=83625 JN439_RS01955 WP_041211850.1 400384..401823(+) (rpoN/rpoN1) [Aeromonas caviae strain KAM329]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGGCAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGATACCACCTGGGACGAGGTCTACTCGGCTGGTACAGCTCAGAGTGCTGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAAGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCGGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTCCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ATTCTGCTCCGCGCATCCGTGTCAATGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0TRY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482

Multiple sequence alignment