Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH43_RS17935 Genome accession   NZ_CP126106
Coordinates   3801193..3802908 (-) Length   571 a.a.
NCBI ID   WP_283915137.1    Uniprot ID   -
Organism   Peribacillus simplex strain RZ14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3796193..3807908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH43_RS17915 (QNH43_17915) - 3797171..3797407 (+) 237 WP_076365441.1 DUF2627 domain-containing protein -
  QNH43_RS17920 (QNH43_17920) - 3797451..3798185 (-) 735 WP_283915134.1 glycerophosphodiester phosphodiesterase -
  QNH43_RS17925 (QNH43_17925) spo0A 3798618..3799409 (-) 792 WP_283915135.1 sporulation transcription factor Spo0A -
  QNH43_RS17930 (QNH43_17930) spoIVB 3799739..3801031 (-) 1293 WP_283915136.1 SpoIVB peptidase -
  QNH43_RS17935 (QNH43_17935) recN 3801193..3802908 (-) 1716 WP_283915137.1 DNA repair protein RecN Machinery gene
  QNH43_RS17940 (QNH43_17940) argR 3802931..3803380 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  QNH43_RS17945 (QNH43_17945) - 3803707..3804534 (-) 828 WP_283915138.1 TlyA family RNA methyltransferase -
  QNH43_RS17950 (QNH43_17950) dxs 3804539..3806431 (-) 1893 WP_076365431.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH43_RS17955 (QNH43_17955) - 3806681..3807574 (-) 894 WP_283915139.1 polyprenyl synthetase family protein -
  QNH43_RS17960 (QNH43_17960) - 3807576..3807809 (-) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64446.38 Da        Isoelectric Point: 5.2172

>NTDB_id=836239 QNH43_RS17935 WP_283915137.1 3801193..3802908(-) (recN) [Peribacillus simplex strain RZ14]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGIDMNDGMAILRRDISLSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKSSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=836239 QNH43_RS17935 WP_283915137.1 3801193..3802908(-) (recN) [Peribacillus simplex strain RZ14]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTTTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCATCGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACTGAGCGGCAAAAGCGTTTG
CAGGGTAAATGGAAAGCTTGTAACGATTTCCACCTTACGTGAGATAGGACGGACGTTGATAGATATCCATGGTCAGCATG
AACATCAGGAATTAATGGACGAACGACTCCATCTTCCACTGCTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATTCAATTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAGCGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTCCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGAG
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTTGAAGAGGCCGTGTCTAACATCCGTGACCAATTAGACTCTTTGG
ATTATGATACAGAGCGAGTGGAATTCATTGAAAGTCGCCTTAATGAAATAAATCAATTAAAACGTAAATACGGGCGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCTATCGAAGAAGAAGTCGAAAAACTGCAAAATAGGGAAACCCATATAGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATTTAATTGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAAGATTTATACATGGAAAAGACAATTTTCGAACCACATTTCCTT
CAAACGGCCTATACTTTCGATGAATTGTCAGATAGGGGCATCAATCAGTCAGGACTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCATTAAAACCTCTTTCTAAAATTGCATCTGGTGGTGAACTGTCGAGGATCATGCTGGCATTGA
AAAGCATATTCTCCAAGCACCAAGGCATAACTTCCATTATATTTGATGAAGTGGACACAGGTGTGAGCGGAAGGGTTGCG
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTACTTTGCATATCCCATTTGCCACAGGTGGCAGC
TATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACTTCGGTAAAGCCGTTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCAGGAGTGGAGATAACGGATTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTTGCCAAAAGGCTGAAAATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.615