Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U8P28_RS08805 Genome accession   NZ_CP141100
Coordinates   1840308..1840937 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain KE40     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1835308..1845937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8P28_RS08785 (U8P28_08785) ycbZ 1835710..1837470 (-) 1761 WP_227268902.1 AAA family ATPase -
  U8P28_RS08790 (U8P28_08790) matP 1837656..1838108 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  U8P28_RS08795 (U8P28_08795) ompA 1838184..1839224 (-) 1041 WP_001309394.1 porin OmpA -
  U8P28_RS08800 (U8P28_08800) sulA 1839580..1840089 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  U8P28_RS08805 (U8P28_08805) sxy/tfoX 1840308..1840937 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  U8P28_RS08810 (U8P28_08810) yccS 1840900..1843062 (-) 2163 WP_000875041.1 YccS family putative transporter -
  U8P28_RS08815 (U8P28_08815) yccF 1843072..1843518 (-) 447 WP_001261235.1 YccF domain-containing protein -
  U8P28_RS08820 (U8P28_08820) helD 1843641..1845695 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=836229 U8P28_RS08805 WP_000839153.1 1840308..1840937(+) (sxy/tfoX) [Escherichia coli strain KE40]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=836229 U8P28_RS08805 WP_000839153.1 1840308..1840937(+) (sxy/tfoX) [Escherichia coli strain KE40]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1