Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNH43_RS06245 Genome accession   NZ_CP126106
Coordinates   1297673..1299490 (+) Length   605 a.a.
NCBI ID   WP_283917185.1    Uniprot ID   -
Organism   Peribacillus simplex strain RZ14     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292673..1304490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH43_RS06225 (QNH43_06225) spxA 1292999..1293394 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  QNH43_RS06230 (QNH43_06230) mecA 1293888..1294556 (+) 669 WP_283917182.1 adaptor protein MecA -
  QNH43_RS06235 (QNH43_06235) cls 1294672..1296180 (+) 1509 WP_283917183.1 cardiolipin synthase -
  QNH43_RS06240 (QNH43_06240) - 1296274..1297482 (+) 1209 WP_283917184.1 competence protein CoiA family protein -
  QNH43_RS06245 (QNH43_06245) pepF 1297673..1299490 (+) 1818 WP_283917185.1 oligoendopeptidase F Regulator
  QNH43_RS06250 (QNH43_06250) - 1300428..1301294 (-) 867 WP_283918295.1 ClpXP adapter SpxH family protein -
  QNH43_RS06255 (QNH43_06255) - 1301318..1301722 (-) 405 WP_076367109.1 globin -
  QNH43_RS27620 - 1301961..1302326 (-) 366 WP_349654804.1 lytic transglycosylase domain-containing protein -
  QNH43_RS27625 - 1302292..1302618 (-) 327 WP_349654805.1 hypothetical protein -
  QNH43_RS06265 (QNH43_06265) - 1302650..1303228 (-) 579 WP_283917186.1 CYTH domain-containing protein -
  QNH43_RS06270 (QNH43_06270) - 1303546..1304166 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69848.23 Da        Isoelectric Point: 4.6827

>NTDB_id=836228 QNH43_RS06245 WP_283917185.1 1297673..1299490(+) (pepF) [Peribacillus simplex strain RZ14]
MAQETKANTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAERLFVALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDENKVEGFLEEKEDLKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYISFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLQLDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYELNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYVEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=836228 QNH43_RS06245 WP_283917185.1 1297673..1299490(+) (pepF) [Peribacillus simplex strain RZ14]
ATGGCACAGGAAACAAAAGCGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACCTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAAGAAGACCTCAAGAAAGCGGAGGCACATAAAGGGA
CGTTGGGAGAAAGCGCAGAAAGATTATTTGTGGCCCTTCAACTCCAAGATGAGGTATTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCTTTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
CGCCCAAGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGATGAAAACAAAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGATCTGAAATTATACAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCTTATCTGCAGAG
CAGGAAGAATTATTGGCGCAAGCATCAGAAGTACTTGATGCATCGGGCAATACTTTCGGTATGCTTAACAATGCCGATTT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTTGAAATTACTCACGGAAGGTATATCAGCTTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTATGGAGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTAGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGTAA
TAATAACATTCCGGAGACCGTATATGATAATCTCGTTAAAACGGTCAATGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAAGTACTGCAATTAGATGAACTTCATATGTATGATCTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGACGAGGCCAAGGATTATGTCCTTAAAGGTCTTGCTCCGCTTGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAAAACAAAGGGAAACGAAGCGGTGCCTATTCTTCTGGTACATATG
GGACGAATCCTTATATTTTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGTAAATATCAGCCATATCCATACGGAAATTATTCCATATTTGTAGCGGAAGTTGCATCGAC
TTGTAATGAAAACCTGTTGAACGATTATTTACTGAATTCAATCGAAGATGAAAAGAAACGCATCTATTTATTGAATCATT
ACCTGGAAGGTTTCCGAGGCACATTGTTCCGGCAAACGATGTTTGCAGAGTTCGAACATACGATTCATTTAAAAGCTCAA
AATGGGGAAGCTTTGACAGCGGATATGCTTACTAAGGAATATTATGAGCTGAACAAGAAATACTTTGGAGAGAACGTGAC
CATCGATGAAGAAATCGGTTTGGAATGGGCGCGTATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCAACAG
GAATCAGTGCAGCAACTGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATGTGGAGTTCTTG
AAGTCAGGAAGTTCCGATTATCCGATTGAAGTGCTCAAAAAGGCGGGTGTCGATATGACAAAAGCCGAACCTGTACAAGA
AGCCATGAATGTATTCGAAGAAAAATTAAATGAGTTGGAAGAGCTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.505

98.182

0.496