Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   QNH43_RS02750 Genome accession   NZ_CP126106
Coordinates   567423..567704 (-) Length   93 a.a.
NCBI ID   WP_283916715.1    Uniprot ID   -
Organism   Peribacillus simplex strain RZ14     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 562423..572704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH43_RS02730 (QNH43_02730) - 563323..564243 (-) 921 WP_349654799.1 2-dehydropantoate 2-reductase -
  QNH43_RS02735 (QNH43_02735) - 564393..564947 (-) 555 WP_283916713.1 3D domain-containing protein -
  QNH43_RS02740 (QNH43_02740) - 565345..566409 (-) 1065 WP_283916714.1 M20/M25/M40 family metallo-hydrolase -
  QNH43_RS02745 (QNH43_02745) - 566572..567078 (+) 507 WP_283900546.1 general stress protein -
  QNH43_RS02750 (QNH43_02750) pilJ 567423..567704 (-) 282 WP_283916715.1 methyl-accepting chemotaxis protein Machinery gene
  QNH43_RS02755 (QNH43_02755) - 567741..568115 (-) 375 WP_283916716.1 hypothetical protein -
  QNH43_RS02760 (QNH43_02760) - 568308..569768 (-) 1461 WP_283916717.1 PH domain-containing protein -
  QNH43_RS27605 - 569768..569995 (-) 228 WP_349654813.1 PH domain-containing protein -
  QNH43_RS27610 - 569999..570262 (-) 264 WP_349654800.1 hypothetical protein -
  QNH43_RS02770 (QNH43_02770) dacB 570507..571997 (+) 1491 WP_283916718.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 9810.08 Da        Isoelectric Point: 4.5535

>NTDB_id=836218 QNH43_RS02750 WP_283916715.1 567423..567704(-) (pilJ) [Peribacillus simplex strain RZ14]
MSKAVKSLDARSDDISAIVKTISGIAGQTNLLALNAAIEAARAGEHGKGFAVVADEVKKLAEQTENSLKEISEIIQAMQT
DTTNTVQLIDQVN

Nucleotide


Download         Length: 282 bp        

>NTDB_id=836218 QNH43_RS02750 WP_283916715.1 567423..567704(-) (pilJ) [Peribacillus simplex strain RZ14]
ATGAGTAAGGCAGTCAAATCATTGGATGCGCGCTCAGATGATATTAGTGCAATCGTAAAGACTATAAGCGGGATTGCAGG
ACAAACGAATTTACTCGCTCTTAATGCCGCCATCGAAGCAGCCAGGGCCGGTGAGCACGGAAAAGGGTTTGCAGTTGTTG
CCGATGAAGTGAAGAAATTGGCCGAACAGACGGAAAACTCACTGAAAGAAATCTCTGAAATCATTCAAGCCATGCAAACC
GATACAACCAATACCGTTCAATTGATTGATCAAGTCAATTAA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(3-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

56.79

87.097

0.495