Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH43_RS00570 Genome accession   NZ_CP126106
Coordinates   106857..108245 (+) Length   462 a.a.
NCBI ID   WP_076372905.1    Uniprot ID   A0A9W4PDJ3
Organism   Peribacillus simplex strain RZ14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101857..113245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH43_RS00550 (QNH43_00550) - 101969..102430 (+) 462 WP_048677843.1 CtsR family transcriptional regulator -
  QNH43_RS00555 (QNH43_00555) - 102452..103003 (+) 552 WP_283916481.1 UvrB/UvrC motif-containing protein -
  QNH43_RS00560 (QNH43_00560) - 103000..104076 (+) 1077 WP_283916482.1 protein arginine kinase -
  QNH43_RS00565 (QNH43_00565) clpC 104207..106648 (+) 2442 WP_076372907.1 ATP-dependent protease ATP-binding subunit ClpC -
  QNH43_RS00570 (QNH43_00570) radA 106857..108245 (+) 1389 WP_076372905.1 DNA repair protein RadA Machinery gene
  QNH43_RS00575 (QNH43_00575) disA 108248..109321 (+) 1074 WP_283916483.1 DNA integrity scanning diadenylate cyclase DisA -
  QNH43_RS00580 (QNH43_00580) - 109547..110644 (+) 1098 WP_076372901.1 PIN/TRAM domain-containing protein -
  QNH43_RS00585 (QNH43_00585) ispD 110666..111355 (+) 690 WP_283916484.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNH43_RS00590 (QNH43_00590) ispF 111370..111849 (+) 480 WP_283916485.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50175.81 Da        Isoelectric Point: 8.2345

>NTDB_id=836217 QNH43_RS00570 WP_076372905.1 106857..108245(+) (radA) [Peribacillus simplex strain RZ14]
MAVKKKTKFMCQSCGYESPKWMGKCPGCGEWNKMVEETEIVKPARKGAFTNSEVRGSGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSENLFVYAETDM
DYIQQAITDVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPADCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVIIPANNIGGWTAPKGIKIVGVSSVSEALKQSLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=836217 QNH43_RS00570 WP_076372905.1 106857..108245(+) (radA) [Peribacillus simplex strain RZ14]
ATGGCTGTAAAGAAGAAAACAAAATTTATGTGTCAGTCTTGTGGATATGAGTCCCCGAAATGGATGGGGAAATGCCCAGG
ATGCGGCGAATGGAATAAAATGGTCGAGGAAACCGAGATCGTTAAACCAGCCAGAAAAGGGGCTTTTACCAATTCAGAGG
TTAGAGGTTCAGGGGAACGGGAGAAGGCAGCGCCCATAACGACTATTCAATCAGAAAAAGAACCCCGGATTAAGACGGAT
TTAATGGAATTGAATCGTGCTCTTGGGGGCGGGATCGTACAGGGATCACTTGTATTGATCGGTGGGGACCCTGGTATCGG
TAAGTCCACCCTGCTTTTACAGGTATCATCCCAATTGGCGCATAAACAGAAAAAAGTGCTTTATATTTCAGGTGAAGAAT
CAGTCAAGCAGACCAAATTGAGAGCGGATCGGCTTGGGACCATGTCGGAAAATCTATTCGTTTATGCTGAAACCGATATG
GATTATATCCAACAGGCAATTACGGATGTAAAACCGGATTTGGTCATTATTGACTCCATTCAAACGGTATACCATTCGGA
GGTTACATCTGCCCCGGGAAGCGTTTCACAAGTGAGGGAGTGCACAGCCTCACTCATGCGCATTGCTAAAACGAACGGAA
TCGCGATTTTTATCGTCGGCCACGTTACAAAGGAAGGGGCCATCGCGGGGCCGCGGCTGCTTGAGCACATGGTTGACACT
GTATTATATTTTGAAGGTGAAAGACACCATACATATCGAATTATACGTGCGGTTAAAAATCGCTTTGGTTCGACGAATGA
GATGGGCATTTTTGAAATGAAAGAACATGGATTGGAAGAGGTCGCGAATCCATCGGAAATTTTCCTTGAAGAACGGTCGC
AAGGAGCCTCGGGTTCCACAGTCGTCGCATCCATGGAGGGCACAAGGCCGGTGCTAGTTGAAATTCAAGCATTGATTTCA
CCTACGAGTTTTGGCAATCCGCGGCGAATGGCCACGGGAATCGACCACAATCGGGTTTCGCTTTTAATGGCTGTTCTGGA
AAAGAGAGTGGGCTTGCTGCTCCAAAACCAAGATGCGTATTTAAAGGTTGCTGGTGGTGTCAAGCTGGATGAACCTGCAA
TTGACCTCGCTGTCGCAATAAGCATTGCTTCAAGCTTCCGTGATAAACCAACAAACCCTGCCGATTGCATCATTGGTGAA
GTGGGGCTGACTGGTGAGGTAAGAAGGGTGTCAAGAATTGAACAAAGGGTGCAGGAAGCCGCAAAATTAGGGTTTGAGCG
GGTTATCATACCGGCTAATAATATAGGGGGATGGACCGCGCCGAAGGGTATTAAGATCGTGGGTGTTTCATCGGTTTCGG
AGGCTCTTAAACAATCGTTAGGGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.174

99.567

0.768
  radA Streptococcus mitis NCTC 12261

62.418

98.485

0.615
  radA Streptococcus pneumoniae Rx1

61.978

98.485

0.61
  radA Streptococcus pneumoniae D39

61.978

98.485

0.61
  radA Streptococcus pneumoniae R6

61.978

98.485

0.61
  radA Streptococcus pneumoniae TIGR4

61.978

98.485

0.61
  radA Streptococcus mitis SK321

61.758

98.485

0.608