Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   U8P30_RS16385 Genome accession   NZ_CP141084
Coordinates   3455234..3455710 (-) Length   158 a.a.
NCBI ID   WP_032261139.1    Uniprot ID   -
Organism   Escherichia coli strain KE48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3450234..3460710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8P30_RS16345 (U8P30_16345) cadC 3450582..3452120 (-) 1539 WP_001187191.1 lysine decarboxylation/transport transcriptional activator CadC -
  U8P30_RS16350 (U8P30_16350) - 3452380..3452539 (-) 160 Protein_3187 integrase -
  U8P30_RS16355 (U8P30_16355) - 3452955..3453515 (-) 561 Protein_3188 DUF4942 domain-containing protein -
  U8P30_RS16360 (U8P30_16360) - 3453623..3453820 (-) 198 WP_089078746.1 DUF957 domain-containing protein -
  U8P30_RS16365 (U8P30_16365) - 3453848..3454045 (-) 198 Protein_3190 DUF5983 family protein -
  U8P30_RS16370 (U8P30_16370) cbtA 3454042..3454419 (-) 378 WP_021527014.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  U8P30_RS16375 (U8P30_16375) cbeA 3454508..3454876 (-) 369 WP_032261140.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  U8P30_RS16380 (U8P30_16380) - 3454950..3455171 (-) 222 WP_000692320.1 DUF987 domain-containing protein -
  U8P30_RS16385 (U8P30_16385) radC 3455234..3455710 (-) 477 WP_032261139.1 JAB domain-containing protein Machinery gene
  U8P30_RS16390 (U8P30_16390) - 3455726..3456211 (-) 486 WP_021526886.1 antirestriction protein -
  U8P30_RS16395 (U8P30_16395) - 3456302..3457120 (-) 819 WP_032261137.1 DUF932 domain-containing protein -
  U8P30_RS16400 (U8P30_16400) - 3457447..3460293 (-) 2847 WP_094030318.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17663.29 Da        Isoelectric Point: 7.2523

>NTDB_id=836101 U8P30_RS16385 WP_032261139.1 3455234..3455710(-) (radC) [Escherichia coli strain KE48]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLIQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=836101 U8P30_RS16385 WP_032261139.1 3455234..3455710(-) (radC) [Escherichia coli strain KE48]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCTGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGTACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGCACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGATACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386