Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QNH19_RS11965 Genome accession   NZ_CP126104
Coordinates   2481011..2481346 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain MB7_B11     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2476011..2486346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH19_RS11945 (QNH19_11945) gcvT 2476617..2477717 (-) 1101 WP_283886845.1 glycine cleavage system aminomethyltransferase GcvT -
  QNH19_RS11950 (QNH19_11950) - 2478141..2479811 (+) 1671 WP_063094778.1 SNF2-related protein -
  QNH19_RS11955 (QNH19_11955) - 2479833..2480627 (+) 795 WP_014418368.1 YqhG family protein -
  QNH19_RS11960 (QNH19_11960) sinI 2480804..2480977 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  QNH19_RS11965 (QNH19_11965) sinR 2481011..2481346 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  QNH19_RS11970 (QNH19_11970) - 2481394..2482179 (-) 786 WP_007408329.1 TasA family protein -
  QNH19_RS11975 (QNH19_11975) - 2482244..2482828 (-) 585 WP_015240205.1 signal peptidase I -
  QNH19_RS11980 (QNH19_11980) tapA 2482800..2483471 (-) 672 WP_031378945.1 amyloid fiber anchoring/assembly protein TapA -
  QNH19_RS11985 (QNH19_11985) - 2483730..2484059 (+) 330 WP_080130387.1 DUF3889 domain-containing protein -
  QNH19_RS11990 (QNH19_11990) - 2484099..2484278 (-) 180 WP_003153093.1 YqzE family protein -
  QNH19_RS11995 (QNH19_11995) comGG 2484335..2484712 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  QNH19_RS12000 (QNH19_12000) comGF 2484713..2485213 (-) 501 WP_254895460.1 competence type IV pilus minor pilin ComGF -
  QNH19_RS12005 (QNH19_12005) comGE 2485122..2485436 (-) 315 WP_080130386.1 competence type IV pilus minor pilin ComGE Machinery gene
  QNH19_RS12010 (QNH19_12010) comGD 2485420..2485857 (-) 438 WP_283886857.1 competence type IV pilus minor pilin ComGD Machinery gene
  QNH19_RS12015 (QNH19_12015) comGC 2485847..2486155 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=836101 QNH19_RS11965 WP_003153104.1 2481011..2481346(+) (sinR) [Bacillus velezensis strain MB7_B11]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=836101 QNH19_RS11965 WP_003153104.1 2481011..2481346(+) (sinR) [Bacillus velezensis strain MB7_B11]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991