Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QNH19_RS05395 Genome accession   NZ_CP126104
Coordinates   1048740..1049318 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain MB7_B11     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1043740..1054318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH19_RS05375 (QNH19_05375) - 1044242..1045534 (-) 1293 WP_043021330.1 globin-coupled sensor protein -
  QNH19_RS05380 (QNH19_05380) - 1045655..1047178 (-) 1524 WP_069007026.1 FAD-dependent oxidoreductase -
  QNH19_RS05385 (QNH19_05385) - 1047303..1048160 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  QNH19_RS05390 (QNH19_05390) - 1048191..1048424 (-) 234 WP_025284522.1 IDEAL domain-containing protein -
  QNH19_RS05395 (QNH19_05395) comK 1048740..1049318 (+) 579 WP_003155179.1 competence protein ComK Regulator
  QNH19_RS05400 (QNH19_05400) - 1049464..1049832 (+) 369 WP_283888100.1 iron chaperone -
  QNH19_RS05405 (QNH19_05405) - 1049859..1050230 (+) 372 WP_015239528.1 iron chaperone -
  QNH19_RS05410 (QNH19_05410) - 1050353..1050862 (+) 510 WP_283888102.1 MepB family protein -
  QNH19_RS05415 (QNH19_05415) - 1051091..1051801 (-) 711 WP_015239530.1 YrpD family protein -
  QNH19_RS05420 (QNH19_05420) - 1051997..1052266 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  QNH19_RS05425 (QNH19_05425) - 1052298..1052615 (-) 318 WP_003155166.1 YbjQ family protein -
  QNH19_RS05430 (QNH19_05430) - 1052657..1054127 (-) 1471 Protein_1007 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=836078 QNH19_RS05395 WP_003155179.1 1048740..1049318(+) (comK) [Bacillus velezensis strain MB7_B11]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=836078 QNH19_RS05395 WP_003155179.1 1048740..1049318(+) (comK) [Bacillus velezensis strain MB7_B11]
ATGTGCCAGAAAACACATGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCTTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823