Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FFK26_RS15130 Genome accession   NZ_AP024130
Coordinates   3095910..3096539 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SI-NP020     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3090910..3101539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFK26_RS15115 (BvCmsSINP020_2995) helD 3091152..3093206 (-) 2055 WP_000420533.1 DNA helicase IV -
  FFK26_RS15120 (BvCmsSINP020_2996) yccF 3093329..3093775 (+) 447 WP_001261231.1 YccF domain-containing protein -
  FFK26_RS15125 (BvCmsSINP020_2997) yccS 3093785..3095947 (+) 2163 WP_000875015.1 YccS family putative transporter -
  FFK26_RS15130 (BvCmsSINP020_2998) sxy/tfoX 3095910..3096539 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FFK26_RS15135 (BvCmsSINP020_2999) sulA 3096758..3097267 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FFK26_RS15140 (BvCmsSINP020_3001) ompA 3097624..3098676 (+) 1053 WP_000750419.1 porin OmpA -
  FFK26_RS15145 (BvCmsSINP020_3002) matP 3098751..3099203 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  FFK26_RS15150 (BvCmsSINP020_3003) ycbZ 3099389..3101149 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=83605 FFK26_RS15130 WP_000839153.1 3095910..3096539(-) (sxy/tfoX) [Escherichia coli strain SI-NP020]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=83605 FFK26_RS15130 WP_000839153.1 3095910..3096539(-) (sxy/tfoX) [Escherichia coli strain SI-NP020]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment