Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U8P30_RS01730 Genome accession   NZ_CP141084
Coordinates   315201..315830 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0H2V5S2
Organism   Escherichia coli strain KE48     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 310201..320830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8P30_RS01715 (U8P30_01715) helD 310443..312497 (-) 2055 WP_001443200.1 DNA helicase IV -
  U8P30_RS01720 (U8P30_01720) yccF 312620..313066 (+) 447 WP_001261236.1 YccF domain-containing protein -
  U8P30_RS01725 (U8P30_01725) yccS 313076..315238 (+) 2163 WP_000875041.1 YccS family putative transporter -
  U8P30_RS01730 (U8P30_01730) sxy/tfoX 315201..315830 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  U8P30_RS01735 (U8P30_01735) sulA 316049..316558 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  U8P30_RS01740 (U8P30_01740) ompA 316914..317966 (+) 1053 WP_001528868.1 porin OmpA -
  U8P30_RS01745 (U8P30_01745) matP 318044..318496 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  U8P30_RS01750 (U8P30_01750) ycbZ 318682..320442 (+) 1761 WP_000156504.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=836030 U8P30_RS01730 WP_000839136.1 315201..315830(-) (sxy/tfoX) [Escherichia coli strain KE48]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=836030 U8P30_RS01730 WP_000839136.1 315201..315830(-) (sxy/tfoX) [Escherichia coli strain KE48]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V5S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99