Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   U8P26_RS24760 Genome accession   NZ_CP141083
Coordinates   4954827..4955267 (+) Length   146 a.a.
NCBI ID   WP_000360914.1    Uniprot ID   A0A0H2YVZ3
Organism   Escherichia coli strain KE50     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4949827..4960267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8P26_RS24740 (U8P26_24740) aroP 4950827..4952197 (+) 1371 WP_000399017.1 aromatic amino acid transporter AroP -
  U8P26_RS24745 (U8P26_24745) ampE 4952240..4953094 (-) 855 WP_000171980.1 beta-lactamase regulator AmpE -
  U8P26_RS24750 (U8P26_24750) ampD 4953091..4953642 (-) 552 WP_000923703.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  U8P26_RS24755 (U8P26_24755) nadC 4953730..4954623 (+) 894 WP_001135168.1 carboxylating nicotinate-nucleotide diphosphorylase -
  U8P26_RS24760 (U8P26_24760) pilA 4954827..4955267 (+) 441 WP_000360914.1 prepilin peptidase-dependent pilin Machinery gene
  U8P26_RS24765 (U8P26_24765) pilB 4955277..4956662 (+) 1386 WP_001025180.1 type II secretion system protein GspE Machinery gene
  U8P26_RS24770 (U8P26_24770) hofC 4956652..4957854 (+) 1203 WP_000157289.1 protein transport protein HofC -
  U8P26_RS24775 (U8P26_24775) guaC 4957889..4958932 (-) 1044 WP_001217320.1 GMP reductase -
  U8P26_RS24780 (U8P26_24780) - 4959088..4959132 (-) 45 WP_120795372.1 protein YacM -
  U8P26_RS24785 (U8P26_24785) coaE 4959157..4959777 (+) 621 WP_001269520.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15620.77 Da        Isoelectric Point: 4.5237

>NTDB_id=836027 U8P26_RS24760 WP_000360914.1 4954827..4955267(+) (pilA) [Escherichia coli strain KE50]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLNTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=836027 U8P26_RS24760 WP_000360914.1 4954827..4955267(+) (pilA) [Escherichia coli strain KE50]
ATGGACAAGCAACGCGGTTTTACACTTATTGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAAATACCTGCGACGGTGGCAGCAATGGCATTCCTTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGTAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2YVZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363