Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U8P26_RS20330 Genome accession   NZ_CP141083
Coordinates   4031009..4031638 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli strain KE50     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4026009..4036638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8P26_RS20315 (U8P26_20315) helD 4026251..4028305 (-) 2055 WP_001295938.1 DNA helicase IV -
  U8P26_RS20320 (U8P26_20320) yccF 4028428..4028874 (+) 447 WP_001261235.1 YccF domain-containing protein -
  U8P26_RS20325 (U8P26_20325) yccS 4028884..4031046 (+) 2163 WP_000875041.1 YccS family putative transporter -
  U8P26_RS20330 (U8P26_20330) sxy/tfoX 4031009..4031638 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  U8P26_RS20335 (U8P26_20335) sulA 4031857..4032366 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  U8P26_RS20340 (U8P26_20340) ompA 4032722..4033774 (+) 1053 WP_001346420.1 porin OmpA -
  U8P26_RS20345 (U8P26_20345) matP 4033850..4034302 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  U8P26_RS20350 (U8P26_20350) ycbZ 4034488..4036248 (+) 1761 WP_000156502.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=836014 U8P26_RS20330 WP_000839151.1 4031009..4031638(-) (sxy/tfoX) [Escherichia coli strain KE50]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=836014 U8P26_RS20330 WP_000839151.1 4031009..4031638(-) (sxy/tfoX) [Escherichia coli strain KE50]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGTCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995