Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNH44_RS07180 Genome accession   NZ_CP126102
Coordinates   1354283..1356100 (+) Length   605 a.a.
NCBI ID   WP_163143803.1    Uniprot ID   -
Organism   Cytobacillus firmus strain LN5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349283..1361100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH44_RS07155 (QNH44_07155) - 1349634..1349822 (-) 189 WP_076256698.1 hypothetical protein -
  QNH44_RS07160 (QNH44_07160) - 1350067..1350642 (+) 576 WP_163143799.1 GNAT family N-acetyltransferase -
  QNH44_RS07165 (QNH44_07165) spxA 1351117..1351512 (+) 396 WP_009331204.1 transcriptional regulator SpxA -
  QNH44_RS07170 (QNH44_07170) mecA 1351860..1352525 (+) 666 WP_048010951.1 adaptor protein MecA -
  QNH44_RS07175 (QNH44_07175) - 1352970..1354160 (+) 1191 WP_227886539.1 competence protein CoiA family protein -
  QNH44_RS07180 (QNH44_07180) pepF 1354283..1356100 (+) 1818 WP_163143803.1 oligoendopeptidase F Regulator
  QNH44_RS07185 (QNH44_07185) - 1356618..1357487 (-) 870 WP_163143813.1 ClpXP adapter SpxH family protein -
  QNH44_RS07190 (QNH44_07190) - 1357490..1357894 (-) 405 WP_048010947.1 globin -
  QNH44_RS07195 (QNH44_07195) - 1358141..1358782 (-) 642 WP_163143805.1 lytic transglycosylase domain-containing protein -
  QNH44_RS07200 (QNH44_07200) - 1358815..1359405 (-) 591 WP_163143807.1 CYTH domain-containing protein -
  QNH44_RS07205 (QNH44_07205) - 1359604..1359981 (+) 378 WP_163143809.1 hypothetical protein -
  QNH44_RS07210 (QNH44_07210) - 1360126..1360764 (+) 639 WP_048010943.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69913.34 Da        Isoelectric Point: 4.9444

>NTDB_id=835990 QNH44_RS07180 WP_163143803.1 1354283..1356100(+) (pepF) [Cytobacillus firmus strain LN5]
MANETTVKKLPARNEISPEDTWRLEDIFPSDDEWNKEYSEVQKLIPDAGKYQGRLGESAETLYAALQFQDHLLSRLGKLY
TYAHMRYDQDTTNSFYQGMDDRIKNLYSEAASALAYIVPELLAEDEEKIAGFLKDKTELQLYKHSLEEINLQRPHVLSAE
QESLLAQASEVLGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRFIRFLESDEQRVRHDAFKAVYETYGKFRNTFAST
LSGNVKKDNFNAKIRNYDSARHAALSADNIPESVYENLVNTINDNLHLLHRYVKLRKKVLGVKELHMYDLYTPLVKEVKM
EIPYNEAKDLILKGLKPLGEDYLNILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADSLTKEYYELNKKYFGDEDIVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILQEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLNEMENLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=835990 QNH44_RS07180 WP_163143803.1 1354283..1356100(+) (pepF) [Cytobacillus firmus strain LN5]
ATGGCTAATGAAACAACAGTAAAGAAACTGCCGGCAAGGAATGAGATTTCACCTGAAGATACGTGGCGTTTGGAGGATAT
TTTCCCTTCTGATGATGAGTGGAACAAGGAATACAGTGAAGTTCAGAAGCTGATTCCGGATGCAGGTAAGTATCAGGGCA
GGCTCGGGGAAAGTGCTGAAACATTATATGCAGCGCTTCAGTTCCAGGATCATTTACTTTCACGCCTGGGGAAGCTCTAT
ACATATGCACATATGCGCTATGATCAGGATACAACAAATTCATTTTATCAGGGAATGGATGACAGAATTAAAAATTTGTA
TTCTGAAGCTGCTAGTGCACTTGCCTATATTGTTCCTGAGCTGCTTGCTGAAGATGAAGAGAAGATTGCAGGCTTTTTGA
AGGATAAAACCGAGCTGCAATTATATAAACATTCACTGGAGGAAATTAACCTTCAAAGGCCTCATGTATTATCTGCTGAG
CAGGAATCCCTGCTTGCTCAGGCTTCCGAGGTGCTTGGGGCTTCCAGTAATACATTTGGCATGCTGAATAATGCAGATTT
GGAGTTTCCGTCCATTAAAGATGAAAATGGGGAAGAAGTTGAAATTACTCACGGACGATTCATTCGTTTTCTTGAAAGCG
ATGAGCAGCGTGTCCGGCATGATGCTTTCAAAGCTGTATATGAGACTTATGGGAAGTTTCGCAATACATTTGCAAGCACT
CTAAGTGGAAACGTAAAAAAAGATAACTTCAATGCAAAGATCCGGAATTATGACTCCGCGCGCCATGCTGCCCTTTCTGC
GGACAATATTCCTGAAAGTGTTTATGAAAATCTGGTCAATACCATTAACGATAACCTGCATTTGCTGCACCGCTATGTCA
AGCTCCGCAAGAAGGTTCTTGGGGTTAAGGAGCTTCATATGTACGATCTCTACACTCCTTTAGTGAAGGAAGTAAAAATG
GAGATACCTTATAATGAGGCAAAAGACCTGATTTTAAAAGGATTAAAGCCACTTGGTGAAGACTATCTAAATATTTTAAA
AGAGGGTTTTGAAAATAGATGGGTTGATGTTCATGAGAATAAAGGCAAAAGGAGCGGGGCTTATTCTTCGGGAACCTATG
GCACCAACCCTTATATACTAATGAACTGGCAGGACAATGTGAACAACTTATTTACTCTGGCTCATGAATTTGGCCATTCG
GTTCACAGCTACTATACAAGAAAATATCAGCCATACCCTTATGGAAACTATTCAATTTTTGTTGCAGAGGTTGCCTCTAC
TTGTAATGAAGCCCTCTTAAACGATTATCTGCTAAAAACAATTGATGATGATAAGAAGCGGCTGTATCTGCTGAATCACT
ATCTTGAAGGCTTTAGAGGCACTGTTTTCCGCCAGACCATGTTTGCAGAATTTGAACATCTTATTCATCAAAAGGCGCAA
AACAATGAAGCCTTGACTGCAGATTCATTGACTAAAGAATATTATGAACTTAATAAGAAGTATTTTGGGGATGAAGATAT
CGTAATTGATGAGGAAATCGGCCTGGAATGGTCCAGAATTCCGCATTTCTACTATAATTATTATGTTTATCAATATGCAA
CAGGCTTCAGTGCGGCTACGGCATTAAGCAAGCAAATTCTCCAGGAAGGCCAGCCTGCAGTTGACAGATATATTGAGTTC
CTGAAATCCGGCAGCTCGGATTACCCAATTGAAGTGCTAAAGAAAGCCGGTGTAGATATGACGAGCAGCAAGCCGATTGA
GGATGCCTGCAAAGTATTTGAAGAAAAGCTTAATGAAATGGAAAACTTGCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.495

98.182

0.486