Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QNH44_RS01075 Genome accession   NZ_CP126102
Coordinates   188081..189034 (+) Length   317 a.a.
NCBI ID   WP_095245830.1    Uniprot ID   -
Organism   Cytobacillus firmus strain LN5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183081..194034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH44_RS01055 (QNH44_01055) - 184597..184722 (+) 126 WP_258752018.1 hypothetical protein -
  QNH44_RS01060 (QNH44_01060) glmS 184819..186621 (+) 1803 WP_048008707.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  QNH44_RS01065 (QNH44_01065) - 186830..187273 (+) 444 WP_283913886.1 DUF4275 family protein -
  QNH44_RS01070 (QNH44_01070) - 187418..187807 (+) 390 WP_048008708.1 ribbon-helix-helix protein, CopG family -
  QNH44_RS01075 (QNH44_01075) ceuB 188081..189034 (+) 954 WP_095245830.1 ABC transporter permease Machinery gene
  QNH44_RS01080 (QNH44_01080) - 189024..189977 (+) 954 WP_163144672.1 iron chelate uptake ABC transporter family permease subunit -
  QNH44_RS01085 (QNH44_01085) - 189974..190741 (+) 768 WP_163144674.1 ABC transporter ATP-binding protein -
  QNH44_RS01090 (QNH44_01090) - 190937..191962 (+) 1026 WP_283913887.1 siderophore ABC transporter substrate-binding protein -
  QNH44_RS01095 (QNH44_01095) - 192344..192982 (+) 639 WP_222501792.1 O-methyltransferase -
  QNH44_RS01100 (QNH44_01100) - 193036..193872 (-) 837 WP_048008714.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34689.75 Da        Isoelectric Point: 9.3878

>NTDB_id=835973 QNH44_RS01075 WP_095245830.1 188081..189034(+) (ceuB) [Cytobacillus firmus strain LN5]
MRLWMLGIAAIVLSFISLFIGAIDITPKDLLNWESDETHIFLISRIPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALAGTFLFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFLGYEADLL
QNLSSWLMGSFTLIIAGRYELLYVSIPAIILAYLYANKFTVAGMGEDFARNLGLSYKLVLNIGLVLVAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=835973 QNH44_RS01075 WP_095245830.1 188081..189034(+) (ceuB) [Cytobacillus firmus strain LN5]
ATGAGATTATGGATGTTAGGAATTGCAGCCATTGTTCTGTCTTTTATCTCGCTGTTTATCGGTGCAATAGATATAACGCC
TAAGGATCTGCTTAATTGGGAATCAGATGAAACACATATCTTCCTTATCAGCCGCATTCCACGTCTATTGGCGATTATTT
TAGCGGGGGCAGGAATGAGTATTGCCGGTTTAATTATGCAGTCTTTAAGCCGCAATAAGTTTGTATCACCAACAACAGCC
GGAACTTTGGATGCAGCAAAACTGGGTATTTTAATTTCCATGCTGTTTTTTACGAATGTCACTTATACACAGCAGGTTAT
TTTTAGCTTTGCCTTTGCTTTGGCAGGTACATTTCTCTTCATGCAGATTTTAGATCGTATAAAATTTAAAGATGTTATTT
TCGTTCCGTTAATCGGAATTATGTATGGAAATATACTATCTTCGATTACAACGTTTCTTGGATATGAAGCTGATCTGCTG
CAAAATCTATCTTCCTGGCTTATGGGAAGTTTTACTTTGATTATTGCCGGCCGTTATGAGCTTTTATATGTTAGTATTCC
CGCTATTATTCTGGCGTATCTTTATGCGAATAAATTTACGGTTGCCGGAATGGGTGAGGATTTTGCAAGAAATCTTGGCT
TAAGCTATAAGCTGGTACTGAATATTGGCCTGGTCCTTGTTGCGGTTATCTCAACAACGGTGGTTCTTACTGTCGGAGTT
ATTCCATTTTTAGGACTAATCGTTCCCAATATTGTCTCCTTATATTTAGGTGACAACCTGCGCAAAACAATTCCGCATAC
AGCGGTGCTGGGAATTGTCTTCCTATTAATATGTGACATTTTGGGGCGCATCATCATTCATCCTTATGAAATTCCGGTTA
ATGTAACCGTGGCAGTGATAGGCAGTGCTATCTTCTTAACGATGCTGCTAAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.482

94.953

0.527