Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QNH24_RS23845 Genome accession   NZ_CP126101
Coordinates   4792958..4793908 (-) Length   316 a.a.
NCBI ID   WP_283869844.1    Uniprot ID   A0AAX3WVG1
Organism   Lysinibacillus pakistanensis strain LY1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4787958..4798908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH24_RS23820 (QNH24_23820) - 4789064..4789720 (+) 657 WP_283869839.1 hypothetical protein -
  QNH24_RS23825 (QNH24_23825) - 4789867..4790181 (-) 315 WP_283869840.1 antibiotic biosynthesis monooxygenase -
  QNH24_RS23830 (QNH24_23830) - 4790183..4791190 (-) 1008 WP_283869841.1 siderophore ABC transporter substrate-binding protein -
  QNH24_RS23835 (QNH24_23835) - 4791254..4792015 (-) 762 WP_283869842.1 ABC transporter ATP-binding protein -
  QNH24_RS23840 (QNH24_23840) - 4792012..4792965 (-) 954 WP_283869843.1 iron chelate uptake ABC transporter family permease subunit -
  QNH24_RS23845 (QNH24_23845) ceuB 4792958..4793908 (-) 951 WP_283869844.1 ABC transporter permease Machinery gene
  QNH24_RS23850 (QNH24_23850) - 4794197..4795249 (-) 1053 WP_283869845.1 hypothetical protein -
  QNH24_RS23855 (QNH24_23855) menC 4795348..4796454 (-) 1107 WP_283869846.1 o-succinylbenzoate synthase -
  QNH24_RS23860 (QNH24_23860) - 4796477..4797301 (-) 825 WP_283869847.1 GNAT family N-acetyltransferase -
  QNH24_RS23865 (QNH24_23865) - 4797301..4798446 (-) 1146 WP_283869848.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34804.03 Da        Isoelectric Point: 10.1143

>NTDB_id=835962 QNH24_RS23845 WP_283869844.1 4792958..4793908(-) (ceuB) [Lysinibacillus pakistanensis strain LY1]
MKIRYLLTATVVLSIVSLFIGVVNIKPSDLLDFQSEETRLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYKADII
QNISAWLQGDFSLMMKGRYELLYISVPVLIFAYIYANRFTVAGMGEDFAKNLGLSYKFVVNFGLVLVALISTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLLCDILGRVLIYPYEIPISMTVGVIGSAIFLIMLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=835962 QNH24_RS23845 WP_283869844.1 4792958..4793908(-) (ceuB) [Lysinibacillus pakistanensis strain LY1]
ATGAAAATAAGATATCTTTTAACAGCAACTGTAGTGTTGTCGATTGTGTCACTGTTTATCGGAGTAGTGAATATTAAACC
GAGTGATCTATTAGACTTCCAATCAGAAGAAACTAGACTATTTTTAATTAGTCGTGTACCTAGGCTTGTAGCAATTTTAC
TGGCTGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTTGTGTCACCCACAACTGCA
GGTACTTTAGATGCTACAAAGTTGGGTGTGCTGATTTCGATGATGTTTTTTACAAATGTCACGTACTTTCAAAAAATTTC
CTTCGCTTTCATATTTGCTCTAGCCGGCACACTATTATTTATGCAAATATTAAATCGGATTAAATTTAAAGATGCAATCT
TTATACCGCTTATTGGCTTGATGTTTGGGAATATTCTTTCGTCTATTACGACATTCTTTGCGTATAAGGCAGATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATGATGAAAGGTCGTTATGAACTTTTATACATAAGTGTACC
CGTGCTGATTTTTGCTTACATTTATGCAAACCGTTTCACAGTCGCTGGTATGGGTGAGGATTTTGCTAAAAATCTTGGTC
TTTCCTACAAGTTTGTTGTGAATTTTGGTTTAGTGTTAGTAGCCCTTATTTCAACAACAGTGGTGCTTACTGTTGGTGTG
ATTCCTTTCCTTGGGTTAATCATTCCAAATATCATTTCGCTGTTCAAGGGGGATAATCTTGCAAAAACATTGCCTCATAC
TGCTTTGCTAGGGATGTCGTTCTTACTATTATGCGACATTTTAGGGCGTGTGCTGATTTACCCTTATGAAATTCCAATTA
GTATGACAGTTGGTGTCATCGGAAGTGCGATCTTCCTAATTATGTTGTTTAGGGGGAAAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522