Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH41_RS21860 Genome accession   NZ_CP126100
Coordinates   4234951..4235469 (-) Length   172 a.a.
NCBI ID   WP_010332657.1    Uniprot ID   A0A9Q6ABZ4
Organism   Bacillus halotolerans strain LN2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4229951..4240469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS21830 (QNH41_21830) - 4230457..4231809 (+) 1353 WP_101865108.1 MFS transporter -
  QNH41_RS21835 (QNH41_21835) - 4231841..4232395 (-) 555 WP_024123563.1 maltose acetyltransferase domain-containing protein -
  QNH41_RS21840 (QNH41_21840) - 4232414..4232794 (-) 381 WP_283912742.1 VOC family protein -
  QNH41_RS21845 (QNH41_21845) - 4232851..4233786 (-) 936 WP_283912743.1 LacI family DNA-binding transcriptional regulator -
  QNH41_RS21850 (QNH41_21850) xth 4233845..4234603 (-) 759 WP_283912744.1 exodeoxyribonuclease III -
  QNH41_RS21855 (QNH41_21855) rpsR 4234669..4234908 (-) 240 WP_010332656.1 30S ribosomal protein S18 -
  QNH41_RS21860 (QNH41_21860) ssbA 4234951..4235469 (-) 519 WP_010332657.1 single-stranded DNA-binding protein SsbA Machinery gene
  QNH41_RS21865 (QNH41_21865) rpsF 4235510..4235797 (-) 288 WP_010332658.1 30S ribosomal protein S6 -
  QNH41_RS21870 (QNH41_21870) ychF 4235908..4237008 (-) 1101 WP_127696202.1 redox-regulated ATPase YchF -
  QNH41_RS21875 (QNH41_21875) - 4237135..4239138 (-) 2004 WP_283912745.1 molybdopterin-dependent oxidoreductase -
  QNH41_RS21880 (QNH41_21880) - 4239189..4239395 (-) 207 WP_024123568.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18715.28 Da        Isoelectric Point: 4.7621

>NTDB_id=835928 QNH41_RS21860 WP_010332657.1 4234951..4235469(-) (ssbA) [Bacillus halotolerans strain LN2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=835928 QNH41_RS21860 WP_010332657.1 4234951..4235469(-) (ssbA) [Bacillus halotolerans strain LN2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCTGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGGCAGCGTGTCTTCGTGACCGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

99.419

100

0.994
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

36.066

100

0.384