Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QNH41_RS14850 Genome accession   NZ_CP126100
Coordinates   2859579..2860325 (-) Length   248 a.a.
NCBI ID   WP_283912480.1    Uniprot ID   -
Organism   Bacillus halotolerans strain LN2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2854579..2865325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS14825 (QNH41_14825) mreC 2854987..2855859 (-) 873 WP_010335163.1 rod shape-determining protein MreC -
  QNH41_RS14830 (QNH41_14830) mreB 2855890..2856903 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  QNH41_RS14835 (QNH41_14835) radC 2856995..2857690 (-) 696 WP_024122357.1 DNA repair protein RadC -
  QNH41_RS14840 (QNH41_14840) - 2857728..2858297 (-) 570 WP_024122358.1 Maf family nucleotide pyrophosphatase -
  QNH41_RS14845 (QNH41_14845) - 2858448..2859446 (-) 999 WP_106020200.1 SPOR domain-containing protein -
  QNH41_RS14850 (QNH41_14850) comC 2859579..2860325 (-) 747 WP_283912480.1 A24 family peptidase Machinery gene
  QNH41_RS14855 (QNH41_14855) - 2860466..2861758 (-) 1293 WP_283912481.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QNH41_RS14860 (QNH41_14860) valS 2861818..2864460 (-) 2643 WP_103672514.1 valine--tRNA ligase -
  QNH41_RS14865 (QNH41_14865) - 2864909..2865100 (+) 192 WP_024122364.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26557.08 Da        Isoelectric Point: 9.7865

>NTDB_id=835909 QNH41_RS14850 WP_283912480.1 2859579..2860325(-) (comC) [Bacillus halotolerans strain LN2]
MIPILFVLGLILGSFYYTVGCRIPLHISIISPRSACSFCRRTLTPTELIPVLSFILQKGNCKSCGQKLSLMYPAAELSTA
SLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDVKLFAVIGLVLGVKMLAAAFFFSVFIGALYGAAAVLFGRLARKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKTALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=835909 QNH41_RS14850 WP_283912480.1 2859579..2860325(-) (comC) [Bacillus halotolerans strain LN2]
ATGATTCCAATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTATACGGTTGGATGCCGTATCCCCTTGCACAT
ATCCATCATAAGTCCGCGTTCGGCATGTTCCTTTTGCCGTCGAACCCTAACCCCGACGGAATTAATCCCTGTTTTATCTT
TTATTCTGCAAAAAGGCAATTGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTACCCGGCGGCAGAGCTCTCGACAGCG
AGTTTATTTGCAGCCGCGGGATTTCGTTTTGGTTTGTCTTGGGAACTGATTGTTGCGTTGCTGTTTCTTTCTCTTCTTAT
CATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCGGCTGCCGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATGTTAAATTATTTGCCGTTATCGGCCTTGTGCTTGGTGTGAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCAGTTTTTATAGGCGCATTGTACGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGATTCCCTTTGCCCCGGCAATTGCGGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAACGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

79.839

100

0.798