Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNH41_RS13905 Genome accession   NZ_CP126100
Coordinates   2689608..2690033 (-) Length   141 a.a.
NCBI ID   WP_283912459.1    Uniprot ID   -
Organism   Bacillus halotolerans strain LN2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2684608..2695033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS13875 (QNH41_13875) - 2684847..2684981 (-) 135 WP_010335019.1 hypothetical protein -
  QNH41_RS13880 (QNH41_13880) - 2685059..2685790 (-) 732 WP_105953571.1 SGNH/GDSL hydrolase family protein -
  QNH41_RS13885 (QNH41_13885) - 2686037..2686789 (-) 753 WP_127696751.1 N-acetylmuramoyl-L-alanine amidase -
  QNH41_RS13890 (QNH41_13890) - 2686984..2687610 (+) 627 WP_024122122.1 TVP38/TMEM64 family protein -
  QNH41_RS13895 (QNH41_13895) gnd 2687632..2688525 (-) 894 WP_106020128.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  QNH41_RS13900 (QNH41_13900) - 2688846..2689574 (+) 729 WP_283912458.1 DUF308 domain-containing protein -
  QNH41_RS13905 (QNH41_13905) nucA/comI 2689608..2690033 (-) 426 WP_283912459.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QNH41_RS13910 (QNH41_13910) sigK 2690210..2690938 (+) 729 WP_174754429.1 RNA polymerase sporulation sigma factor SigK -
  QNH41_RS13915 (QNH41_13915) fumC 2691512..2692900 (-) 1389 WP_283912460.1 class II fumarate hydratase -
  QNH41_RS13920 (QNH41_13920) - 2693067..2693957 (+) 891 WP_255003581.1 LysR family transcriptional regulator -
  QNH41_RS13925 (QNH41_13925) - 2694378..2694544 (-) 167 Protein_2697 recombinase family protein -
  QNH41_RS13930 (QNH41_13930) - 2694541..2694677 (-) 137 Protein_2698 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15452.57 Da        Isoelectric Point: 5.2217

>NTDB_id=835905 QNH41_RS13905 WP_283912459.1 2689608..2690033(-) (nucA/comI) [Bacillus halotolerans strain LN2]
MKRWMAMLLLAAAVFLGLLGKDMAAPQQAKGAALYDKILYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTKVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=835905 QNH41_RS13905 WP_283912459.1 2689608..2690033(-) (nucA/comI) [Bacillus halotolerans strain LN2]
ATGAAAAGATGGATGGCAATGCTTCTTCTGGCGGCAGCAGTTTTTCTTGGTTTATTGGGAAAGGATATGGCGGCTCCGCA
ACAGGCCAAGGGGGCTGCTTTATATGACAAAATTTTATACTTTCCGTTGTCTCGTTATCCGGAAACCGGGGATCATATAA
GAGATGCGATTGCCGAAGGACATTCTGATATATGTACAATTGATCGTGATGGAGCGGACAAAAGGCGGGAGGAATCATTA
AAAGGAATTCCGACGAAGCCTGGCTACGATCGGGATGAATGGCCGATGGCAGTTTGTGAAGAAGGAGGCGCCGGAGCCGA
TGTCCGATATGTAACGCCTTCTGATAATCGCGGCGCCGGTTCATGGGTAGGAAATCAAATGAGCAGTTATCCAGATGGCA
CCAAAGTGTTGTTTATAGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.905

89.362

0.553