Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QNH41_RS13650 Genome accession   NZ_CP126100
Coordinates   2646039..2646806 (-) Length   255 a.a.
NCBI ID   WP_106020116.1    Uniprot ID   -
Organism   Bacillus halotolerans strain LN2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2641039..2651806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS13630 (QNH41_13630) - 2641213..2642025 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  QNH41_RS13635 (QNH41_13635) ccpN 2642051..2642689 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  QNH41_RS13640 (QNH41_13640) glyS 2642823..2644862 (-) 2040 WP_106022111.1 glycine--tRNA ligase subunit beta -
  QNH41_RS13645 (QNH41_13645) glyQ 2644855..2645742 (-) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  QNH41_RS13650 (QNH41_13650) recO 2646039..2646806 (-) 768 WP_106020116.1 DNA repair protein RecO Machinery gene
  QNH41_RS13655 (QNH41_13655) - 2646843..2646986 (-) 144 WP_024122087.1 YqzL family protein -
  QNH41_RS13660 (QNH41_13660) era 2647130..2648035 (-) 906 WP_101864543.1 GTPase Era -
  QNH41_RS13665 (QNH41_13665) cdd 2648016..2648426 (-) 411 WP_024122088.1 cytidine deaminase -
  QNH41_RS13670 (QNH41_13670) - 2648540..2648917 (-) 378 WP_024122089.1 diacylglycerol kinase family protein -
  QNH41_RS13675 (QNH41_13675) ybeY 2648898..2649371 (-) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  QNH41_RS13680 (QNH41_13680) pgpH 2649372..2651507 (-) 2136 WP_081638339.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.04 Da        Isoelectric Point: 8.3145

>NTDB_id=835901 QNH41_RS13650 WP_106020116.1 2646039..2646806(-) (recO) [Bacillus halotolerans strain LN2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSHDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=835901 QNH41_RS13650 WP_106020116.1 2646039..2646806(-) (recO) [Bacillus halotolerans strain LN2]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCGGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCATGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
GCCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTTTCAAGGATTGGCAATGTGTCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.118

100

0.941