Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QNH41_RS10460 Genome accession   NZ_CP126100
Coordinates   2113452..2114582 (+) Length   376 a.a.
NCBI ID   WP_106021717.1    Uniprot ID   -
Organism   Bacillus halotolerans strain LN2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2105456..2115536 2113452..2114582 within 0


Gene organization within MGE regions


Location: 2105456..2115536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS10380 (QNH41_10380) - 2105456..2105959 (-) 504 WP_283913037.1 hypothetical protein -
  QNH41_RS10385 (QNH41_10385) - 2106047..2106901 (-) 855 WP_283913038.1 DUF5677 domain-containing protein -
  QNH41_RS10390 (QNH41_10390) - 2106904..2107149 (-) 246 WP_283913039.1 hypothetical protein -
  QNH41_RS10395 (QNH41_10395) - 2107185..2107349 (-) 165 WP_151175084.1 hypothetical protein -
  QNH41_RS10400 (QNH41_10400) - 2107402..2107770 (-) 369 WP_283913040.1 hypothetical protein -
  QNH41_RS10405 (QNH41_10405) - 2108314..2108530 (-) 217 Protein_1995 hypothetical protein -
  QNH41_RS10410 (QNH41_10410) - 2108534..2108785 (-) 252 Protein_1996 hypothetical protein -
  QNH41_RS10415 (QNH41_10415) - 2108856..2109035 (+) 180 WP_106022516.1 hypothetical protein -
  QNH41_RS10420 (QNH41_10420) - 2109123..2109746 (-) 624 WP_024571441.1 hypothetical protein -
  QNH41_RS10425 (QNH41_10425) - 2110248..2110478 (+) 231 WP_283913041.1 hypothetical protein -
  QNH41_RS21965 - 2110486..2110545 (-) 60 WP_255004945.1 hypothetical protein -
  QNH41_RS10430 (QNH41_10430) - 2110661..2110807 (-) 147 WP_316961074.1 UPF0715 family protein -
  QNH41_RS10435 (QNH41_10435) - 2111118..2111281 (-) 164 Protein_2002 hypothetical protein -
  QNH41_RS10440 (QNH41_10440) - 2111535..2112014 (-) 480 WP_223203877.1 hypothetical protein -
  QNH41_RS10445 (QNH41_10445) - 2112108..2112341 (-) 234 WP_106022513.1 hypothetical protein -
  QNH41_RS10450 (QNH41_10450) - 2112689..2112949 (+) 261 WP_081638323.1 hypothetical protein -
  QNH41_RS10455 (QNH41_10455) - 2113197..2113367 (+) 171 WP_240312863.1 hypothetical protein -
  QNH41_RS10460 (QNH41_10460) rapC 2113452..2114582 (+) 1131 WP_106021717.1 tetratricopeptide repeat protein Regulator
  QNH41_RS10465 (QNH41_10465) - 2114572..2114715 (+) 144 WP_024121692.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44276.06 Da        Isoelectric Point: 6.1971

>NTDB_id=835888 QNH41_RS10460 WP_106021717.1 2113452..2114582(+) (rapC) [Bacillus halotolerans strain LN2]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEAEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEARPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYERDKSDLLPHTLFTLTQIHFKMKDIEKALVLYKKGIEKAKAINDDVLIAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=835888 QNH41_RS10460 WP_106021717.1 2113452..2114582(+) (rapC) [Bacillus halotolerans strain LN2]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGCTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGCACGTCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ATGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCCTAAAAGACTCAAAAGCCATAA
ACAAACACAAACTAATTGGTGCATCATTATATAATTTGGGAAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCATTGTATGAAAGAGATAAAAGCGATCTCCTCCCTCACACGTTATTTACGCTGACACA
AATTCACTTTAAAATGAAGGATATTGAAAAAGCCTTGGTTCTTTACAAAAAAGGAATCGAGAAAGCAAAAGCAATAAATG
ACGATGTCTTAATTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

44.855

100

0.452