Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   QNH41_RS06260 Genome accession   NZ_CP126100
Coordinates   1232208..1233161 (+) Length   317 a.a.
NCBI ID   WP_283912908.1    Uniprot ID   -
Organism   Bacillus halotolerans strain LN2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227208..1238161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS06235 (QNH41_06235) argF 1229008..1229964 (+) 957 WP_024120900.1 ornithine carbamoyltransferase -
  QNH41_RS06240 (QNH41_06240) - 1230065..1230244 (+) 180 WP_003239319.1 YjzC family protein -
  QNH41_RS06245 (QNH41_06245) - 1230290..1230475 (-) 186 WP_010333727.1 YjzD family protein -
  QNH41_RS06250 (QNH41_06250) - 1230734..1231471 (+) 738 WP_095713629.1 hypothetical protein -
  QNH41_RS06255 (QNH41_06255) - 1231554..1232117 (+) 564 WP_283912907.1 hypothetical protein -
  QNH41_RS06260 (QNH41_06260) med 1232208..1233161 (+) 954 WP_283912908.1 BMP family ABC transporter substrate-binding protein Regulator
  QNH41_RS06265 (QNH41_06265) comZ 1233176..1233367 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  QNH41_RS06270 (QNH41_06270) - 1233397..1233627 (-) 231 WP_081638273.1 hypothetical protein -
  QNH41_RS06275 (QNH41_06275) fabH 1233793..1234731 (+) 939 WP_010333732.1 beta-ketoacyl-ACP synthase III -
  QNH41_RS06280 (QNH41_06280) fabF 1234754..1235992 (+) 1239 WP_024120905.1 beta-ketoacyl-ACP synthase II -
  QNH41_RS06285 (QNH41_06285) - 1236072..1236857 (+) 786 WP_127695474.1 DUF2268 domain-containing protein -
  QNH41_RS06290 (QNH41_06290) appD 1237047..1238033 (+) 987 WP_127695472.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35298.00 Da        Isoelectric Point: 4.9707

>NTDB_id=835872 QNH41_RS06260 WP_283912908.1 1232208..1233161(+) (med) [Bacillus halotolerans strain LN2]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTDEDIINAIED
FHKRGVNLLFGHGSEYEEVFNLVSEDYPDMQFVISNAKAKADNVTSVHLSGEAIGFFGGMTAAHMSKTNQVGVIASFSWQ
PEVDGFIKGAKYENPNIEVNTKYTDHWDDDSTAVNLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFDKGTLKGGDHYYDLKSRVVEMGTFSPLVDKAFQKKIAKLVKIYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=835872 QNH41_RS06260 WP_283912908.1 1232208..1233161(+) (med) [Bacillus halotolerans strain LN2]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTAAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCTAAATACAATGTGGACGTCTACTATAAAGAAGGCGTAAAAACAGATGAAGATATTATAAATGCGATTGAAGAT
TTTCATAAGCGCGGCGTCAATCTCCTCTTTGGCCATGGAAGTGAGTATGAAGAAGTATTTAACTTGGTCAGTGAAGACTA
TCCGGATATGCAGTTTGTGATTTCAAATGCAAAAGCAAAAGCGGACAATGTCACAAGCGTTCATCTCAGCGGGGAAGCAA
TCGGCTTTTTCGGCGGAATGACCGCTGCCCATATGTCAAAAACCAATCAGGTCGGCGTCATCGCTTCTTTTTCATGGCAG
CCAGAAGTGGACGGCTTTATAAAAGGGGCTAAGTATGAAAATCCTAATATAGAAGTGAATACAAAATATACGGATCACTG
GGATGATGATTCGACTGCGGTGAACCTTTATCAAAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCTGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGCCTATATGCGATCGGCTATGTCACAGATCAATCCGATCTT
GGCGAAAACACCGTGTTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATTATAGCTGAGCAATTCGACAAAGG
GACTTTAAAAGGCGGCGATCACTATTACGATCTGAAAAGCCGAGTTGTCGAAATGGGAACCTTCAGTCCGCTTGTGGACA
AAGCCTTTCAGAAAAAAATCGCCAAACTGGTCAAAATATATAACAAAACAGGTGAACTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

93.06

100

0.931