Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNH41_RS01985 Genome accession   NZ_CP126100
Coordinates   372997..373434 (-) Length   145 a.a.
NCBI ID   WP_024120178.1    Uniprot ID   -
Organism   Bacillus halotolerans strain LN2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 367997..378434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS01950 (QNH41_01950) - 368558..368983 (+) 426 WP_198098571.1 RDD family protein -
  QNH41_RS01955 (QNH41_01955) - 369065..369400 (+) 336 WP_101863959.1 YckD family protein -
  QNH41_RS01960 (QNH41_01960) - 369537..369956 (+) 420 WP_024120173.1 MarR family transcriptional regulator -
  QNH41_RS01965 (QNH41_01965) - 369947..370285 (+) 339 WP_024120174.1 DUF3147 family protein -
  QNH41_RS01970 (QNH41_01970) - 370302..371030 (+) 729 WP_283912780.1 AAA family ATPase -
  QNH41_RS01975 (QNH41_01975) - 371103..372536 (+) 1434 WP_283912781.1 family 1 glycosylhydrolase -
  QNH41_RS01980 (QNH41_01980) nin/comJ 372572..372970 (-) 399 WP_283912782.1 competence protein ComJ Regulator
  QNH41_RS01985 (QNH41_01985) nucA/comI 372997..373434 (-) 438 WP_024120178.1 DNA-entry nuclease Machinery gene
  QNH41_RS01990 (QNH41_01990) tlpC 373619..375343 (-) 1725 WP_283912783.1 methyl-accepting chemotaxis protein TlpC -
  QNH41_RS01995 (QNH41_01995) hxlB 375456..376013 (-) 558 WP_101863966.1 6-phospho-3-hexuloisomerase -
  QNH41_RS02000 (QNH41_02000) hxlA 376019..376651 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  QNH41_RS02005 (QNH41_02005) hxlR 376883..377245 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15973.68 Da        Isoelectric Point: 4.1966

>NTDB_id=835858 QNH41_RS01985 WP_024120178.1 372997..373434(-) (nucA/comI) [Bacillus halotolerans strain LN2]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDDQKTSQTEEYDETLAFPSERYPETANHIKDAISEGHSDVCTIDRDGAEERR
EQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=835858 QNH41_RS01985 WP_024120178.1 372997..373434(-) (nucA/comI) [Bacillus halotolerans strain LN2]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGATCAAAAAACGTCTCAAACAGAAGAATATGACGAAACACTGGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACCATAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTAAAAGACGTACCTTCCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGACGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.361

99.31

0.917