Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QNH45_RS22180 Genome accession   NZ_CP126099
Coordinates   4240585..4241331 (-) Length   248 a.a.
NCBI ID   WP_000487012.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain LN15     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4235585..4246331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH45_RS22160 (QNH45_22160) dnaG 4236355..4238151 (-) 1797 WP_048562283.1 DNA primase -
  QNH45_RS22165 (QNH45_22165) - 4238480..4238635 (-) 156 WP_283882775.1 hypothetical protein -
  QNH45_RS22170 (QNH45_22170) - 4239003..4239815 (-) 813 WP_000368940.1 pyruvate, water dikinase regulatory protein -
  QNH45_RS22175 (QNH45_22175) - 4239845..4240477 (-) 633 WP_000583755.1 helix-turn-helix transcriptional regulator -
  QNH45_RS22180 (QNH45_22180) recO 4240585..4241331 (-) 747 WP_000487012.1 DNA repair protein RecO Machinery gene
  QNH45_RS22185 (QNH45_22185) - 4241365..4241508 (-) 144 WP_000883924.1 YqzL family protein -
  QNH45_RS22190 (QNH45_22190) era 4241685..4242590 (-) 906 WP_131934080.1 GTPase Era -
  QNH45_RS22195 (QNH45_22195) - 4242583..4242981 (-) 399 WP_001086294.1 cytidine deaminase -
  QNH45_RS22200 (QNH45_22200) - 4243081..4243434 (-) 354 WP_048562281.1 diacylglycerol kinase family protein -
  QNH45_RS22205 (QNH45_22205) ybeY 4243431..4243901 (-) 471 WP_000054689.1 rRNA maturation RNase YbeY -
  QNH45_RS22210 (QNH45_22210) - 4243898..4246042 (-) 2145 WP_283882779.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28632.15 Da        Isoelectric Point: 8.0462

>NTDB_id=835836 QNH45_RS22180 WP_000487012.1 4240585..4241331(-) (recO) [Bacillus wiedmannii strain LN15]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGNFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=835836 QNH45_RS22180 WP_000487012.1 4240585..4241331(-) (recO) [Bacillus wiedmannii strain LN15]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CCCATGGTAATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATTCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCTGAGCAAGACCAGTATCGTATACCAGTGGG
GGAAGCTGTTCATAAATTATTACGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCGGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGTGGGATTTATTTGAAGTCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548