Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNH45_RS20590 Genome accession   NZ_CP126099
Coordinates   3967582..3968016 (-) Length   144 a.a.
NCBI ID   WP_283882493.1    Uniprot ID   A0AA95LQW9
Organism   Bacillus wiedmannii strain LN15     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3962582..3973016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH45_RS20570 (QNH45_20570) - 3962972..3963529 (+) 558 WP_283882488.1 PadR family transcriptional regulator -
  QNH45_RS20575 (QNH45_20575) - 3963727..3964158 (-) 432 WP_283882489.1 NUDIX domain-containing protein -
  QNH45_RS20580 (QNH45_20580) metE 3964829..3967117 (+) 2289 WP_283882490.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  QNH45_RS20585 (QNH45_20585) comJ 3967156..3967545 (-) 390 WP_283882491.1 competence protein ComJ -
  QNH45_RS20590 (QNH45_20590) nucA/comI 3967582..3968016 (-) 435 WP_283882493.1 DNA-entry nuclease Machinery gene
  QNH45_RS20595 (QNH45_20595) - 3968254..3969003 (+) 750 WP_283882504.1 DUF3967 domain-containing protein -
  QNH45_RS20600 (QNH45_20600) kinB 3969057..3970331 (-) 1275 WP_283882505.1 sporulation sensor histidine kinase KinB -
  QNH45_RS20605 (QNH45_20605) - 3970640..3970840 (+) 201 WP_000929285.1 hypothetical protein -
  QNH45_RS20610 (QNH45_20610) - 3970964..3972127 (+) 1164 WP_283882506.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16158.51 Da        Isoelectric Point: 7.2416

>NTDB_id=835833 QNH45_RS20590 WP_283882493.1 3967582..3968016(-) (nucA/comI) [Bacillus wiedmannii strain LN15]
MKQLKGIIISIIAILSIVVAVYEVLVPEETSIKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEMCTIDRNGAADRRK
LSLAPYPTKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDEYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=835833 QNH45_RS20590 WP_283882493.1 3967582..3968016(-) (nucA/comI) [Bacillus wiedmannii strain LN15]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCAGTCTATGAAGTACTTGTGCC
AGAGGAAACAAGTATAAAAAAAACGAATACGTATGATCAAGTTCTAGAGTTTCCGAAAGAACGATATCCAGAGACCGGAA
AACATATAACGGATGCTATAAAAGAAGGGCATTCAGAAATGTGTACAATTGATCGTAATGGTGCAGCGGATAGAAGGAAA
TTATCGTTAGCGCCATATCCGACGAAGAAAGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCAGCGGATAACCGCGGAGCAGGTTCATGGGTAGGAAATAAGTTAGATGAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.369

77.083

0.535