Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   QNH45_RS20540 Genome accession   NZ_CP126099
Coordinates   3957536..3957994 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain LN15     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3952536..3962994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH45_RS20525 (QNH45_20525) - 3953193..3953429 (+) 237 WP_000283743.1 hypothetical protein -
  QNH45_RS20530 (QNH45_20530) - 3953603..3955711 (-) 2109 WP_283882481.1 polyphosphate kinase -
  QNH45_RS20535 (QNH45_20535) ppx 3955820..3957358 (-) 1539 WP_283882483.1 exopolyphosphatase -
  QNH45_RS20540 (QNH45_20540) kre 3957536..3957994 (+) 459 WP_000804864.1 YkyB family protein Regulator
  QNH45_RS20545 (QNH45_20545) - 3958026..3958688 (-) 663 WP_283882485.1 YkyA family protein -
  QNH45_RS20550 (QNH45_20550) - 3959345..3959986 (-) 642 WP_283882486.1 diguanylate cyclase -
  QNH45_RS20555 (QNH45_20555) - 3960151..3960384 (+) 234 WP_002192635.1 SPP1 phage holin family protein -
  QNH45_RS20560 (QNH45_20560) - 3960416..3960916 (-) 501 WP_283882487.1 hypothetical protein -
  QNH45_RS20565 (QNH45_20565) - 3961339..3962880 (+) 1542 WP_000445749.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=835832 QNH45_RS20540 WP_000804864.1 3957536..3957994(+) (kre) [Bacillus wiedmannii strain LN15]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=835832 QNH45_RS20540 WP_000804864.1 3957536..3957994(+) (kre) [Bacillus wiedmannii strain LN15]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAGTATTTATACTGGTTAAAAAAGACGGCTTTAGAACGCTTAATTGCTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATTCCTCCTACCAAAGAAGATTTTCGAATCCTACCACATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCACTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTCCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493