Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QNH45_RS09960 Genome accession   NZ_CP126099
Coordinates   1923731..1924018 (+) Length   95 a.a.
NCBI ID   WP_283793385.1    Uniprot ID   A0AA95RWP6
Organism   Bacillus wiedmannii strain LN15     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1918731..1929018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH45_RS09940 (QNH45_09940) - 1919758..1919955 (+) 198 WP_002203457.1 DUF4083 domain-containing protein -
  QNH45_RS09945 (QNH45_09945) - 1919986..1920447 (+) 462 WP_283885390.1 NUDIX hydrolase -
  QNH45_RS09950 (QNH45_09950) nadE 1920646..1921464 (-) 819 WP_283885392.1 ammonia-dependent NAD(+) synthetase -
  QNH45_RS09955 (QNH45_09955) - 1921735..1923615 (+) 1881 WP_283885393.1 ABC transporter permease -
  QNH45_RS09960 (QNH45_09960) abrB 1923731..1924018 (+) 288 WP_283793385.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QNH45_RS09965 (QNH45_09965) - 1924293..1925243 (+) 951 WP_283885395.1 serine protease -
  QNH45_RS09970 (QNH45_09970) galT 1925455..1926939 (+) 1485 WP_283885396.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  QNH45_RS09975 (QNH45_09975) - 1927250..1927558 (-) 309 WP_061676468.1 helix-turn-helix transcriptional regulator -
  QNH45_RS09980 (QNH45_09980) - 1927667..1928602 (+) 936 WP_283885397.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10620.35 Da        Isoelectric Point: 5.8623

>NTDB_id=835825 QNH45_RS09960 WP_283793385.1 1923731..1924018(+) (abrB) [Bacillus wiedmannii strain LN15]
MKATGIIRKVDELGRIVIPKELREVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIDGAK
HLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=835825 QNH45_RS09960 WP_283793385.1 1923731..1924018(+) (abrB) [Bacillus wiedmannii strain LN15]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAGTTACGAGAAGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
CATTTAATAAAAGAAATAGAGAAGTTTTTAAATAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.667

94.737

0.537