Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QNH45_RS06500 Genome accession   NZ_CP126099
Coordinates   1257141..1257464 (-) Length   107 a.a.
NCBI ID   WP_283884710.1    Uniprot ID   A0AA95LV50
Organism   Bacillus wiedmannii strain LN15     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1252141..1262464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH45_RS06475 (QNH45_06475) - 1252508..1253794 (+) 1287 WP_283884704.1 D-alanyl-D-alanine carboxypeptidase family protein -
  QNH45_RS06480 (QNH45_06480) - 1253985..1254554 (+) 570 WP_283884705.1 signal peptidase I SipW -
  QNH45_RS06485 (QNH45_06485) - 1254617..1255204 (+) 588 WP_283884706.1 CalY family protein -
  QNH45_RS06490 (QNH45_06490) - 1255339..1256169 (+) 831 WP_283884708.1 DUF4047 domain-containing protein -
  QNH45_RS06495 (QNH45_06495) calY 1256472..1257065 (+) 594 WP_048561461.1 biofilm matrix protein CalY -
  QNH45_RS06500 (QNH45_06500) sinR 1257141..1257464 (-) 324 WP_283884710.1 helix-turn-helix domain-containing protein Regulator
  QNH45_RS06505 (QNH45_06505) - 1257544..1257678 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  QNH45_RS06510 (QNH45_06510) inhA1 1258020..1260407 (+) 2388 WP_283884711.1 M6 family metalloprotease immune inhibitor InhA1 -
  QNH45_RS06515 (QNH45_06515) - 1260579..1261946 (+) 1368 WP_283884712.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12358.16 Da        Isoelectric Point: 8.5805

>NTDB_id=835822 QNH45_RS06500 WP_283884710.1 1257141..1257464(-) (sinR) [Bacillus wiedmannii strain LN15]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQISVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKHDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=835822 QNH45_RS06500 WP_283884710.1 1257141..1257464(-) (sinR) [Bacillus wiedmannii strain LN15]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGCAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTTCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCACGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

68.807

100

0.701