Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNH45_RS06085 Genome accession   NZ_CP126099
Coordinates   1181437..1183263 (+) Length   608 a.a.
NCBI ID   WP_087979792.1    Uniprot ID   A0AA95RY70
Organism   Bacillus wiedmannii strain LN15     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1176437..1188263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH45_RS06065 (QNH45_06065) - 1176760..1177434 (-) 675 WP_283884630.1 TerC family protein -
  QNH45_RS06070 (QNH45_06070) mecA 1177761..1178444 (+) 684 WP_000350712.1 adaptor protein MecA Regulator
  QNH45_RS06075 (QNH45_06075) - 1178517..1180061 (+) 1545 WP_000799207.1 cardiolipin synthase -
  QNH45_RS06080 (QNH45_06080) - 1180142..1181386 (+) 1245 WP_283884632.1 competence protein CoiA family protein -
  QNH45_RS06085 (QNH45_06085) pepF 1181437..1183263 (+) 1827 WP_087979792.1 oligoendopeptidase F Regulator
  QNH45_RS06090 (QNH45_06090) - 1183392..1183565 (-) 174 WP_046957017.1 hypothetical protein -
  QNH45_RS06095 (QNH45_06095) - 1183796..1184689 (-) 894 WP_283884635.1 ClpXP adapter SpxH family protein -
  QNH45_RS06100 (QNH45_06100) - 1184689..1185087 (-) 399 WP_000043382.1 hypothetical protein -
  QNH45_RS06105 (QNH45_06105) - 1185268..1185846 (-) 579 WP_283884636.1 CYTH domain-containing protein -
  QNH45_RS06110 (QNH45_06110) - 1185993..1186364 (+) 372 WP_001180000.1 hypothetical protein -
  QNH45_RS06115 (QNH45_06115) - 1186395..1187033 (+) 639 WP_001081480.1 GTP pyrophosphokinase family protein -
  QNH45_RS06120 (QNH45_06120) - 1187052..1187849 (+) 798 WP_283884637.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70320.64 Da        Isoelectric Point: 4.6728

>NTDB_id=835821 QNH45_RS06085 WP_087979792.1 1181437..1183263(+) (pepF) [Bacillus wiedmannii strain LN15]
MSEQNTAKTLPDRKEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSAHNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLYTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=835821 QNH45_RS06085 WP_087979792.1 1181437..1183263(+) (pepF) [Bacillus wiedmannii strain LN15]
ATGTCTGAACAAAACACAGCAAAAACATTACCAGATCGCAAAGAAATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCCATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGCACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTCTTGA
AAGAAAATAGAGACTTAAGTGTATACGAACATGCATTAGAAGAAATTACGCGTCAACGCCCGCACGTATTATCTGAAGCG
GAAGAGGCTCTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGGGAAGAAGTGGAAATTACACATGGTCGTTACATTCAATTTTTAGAAAGTG
ATGATCGTCGTGTGCGCGAAGATGCATTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGCACG
TTAAGCGGAGCTGTGAAACGTAATAATTTCAATGCGCGTGTTCGTAAATACGATTCTGCACGTCAAGCGGCATTAAGTAA
TAACAATATTCCTGAAGCGGTGTATGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGACTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAGATG
AACGTGAAGTATGAAGAAGCACAAGACATGTTATTAAAGTCTTTAAACGTACTTGGTGATGAGTATGTTGACATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAGCGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATATACACTTGCTCATGAGTTCGGTCATTCC
GTGCATAGTTACTATACAAGAAAGACGCAGCCGCACGTATACGGTGATTATTCAATCTTCGTTGCGGAAGTAGCATCTAC
TTGTAATGAAGCACTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAAGGACATGCGGTTACGCCAGACATGTTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATCGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTTTATCTAAACAAATTTTAGAAGAGGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTATCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCGCTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488