Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH16_RS16540 Genome accession   NZ_CP126098
Coordinates   3479434..3481149 (-) Length   571 a.a.
NCBI ID   WP_034308277.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LC22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3474434..3486149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH16_RS16520 (QNH16_16520) - 3475434..3475670 (+) 237 WP_034308264.1 DUF2627 domain-containing protein -
  QNH16_RS16525 (QNH16_16525) - 3475709..3476443 (-) 735 WP_283866051.1 glycerophosphodiester phosphodiesterase -
  QNH16_RS16530 (QNH16_16530) spo0A 3476860..3477651 (-) 792 WP_034308269.1 sporulation transcription factor Spo0A -
  QNH16_RS16535 (QNH16_16535) spoIVB 3477981..3479273 (-) 1293 WP_063590652.1 SpoIVB peptidase -
  QNH16_RS16540 (QNH16_16540) recN 3479434..3481149 (-) 1716 WP_034308277.1 DNA repair protein RecN Machinery gene
  QNH16_RS16545 (QNH16_16545) argR 3481172..3481621 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  QNH16_RS16550 (QNH16_16550) - 3481941..3482768 (-) 828 WP_034308281.1 TlyA family RNA methyltransferase -
  QNH16_RS16555 (QNH16_16555) dxs 3482773..3484665 (-) 1893 WP_034311320.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH16_RS16560 (QNH16_16560) - 3484915..3485808 (-) 894 WP_057278792.1 polyprenyl synthetase family protein -
  QNH16_RS16565 (QNH16_16565) - 3485810..3486043 (-) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64495.41 Da        Isoelectric Point: 5.2858

>NTDB_id=835777 QNH16_RS16540 WP_034308277.1 3479434..3481149(-) (recN) [Peribacillus frigoritolerans strain LC22]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIAAAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKHSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=835777 QNH16_RS16540 WP_034308277.1 3479434..3481149(-) (recN) [Peribacillus frigoritolerans strain LC22]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTCTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCAGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACAAAGCGGTAAAAGCGTTTG
CAGGGTAAATGGGAAGCTGGTGACGATTTCCACTTTACGTGAGATAGGGCGAACATTGATAGACATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTTCATCTTCCTCTGCTCGATCAATTCGGCGGTGAAAAAATCGCAGCTGCACTC
ACTGAATACCAAAAGTTATATAAACGATATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAGTTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGAGAAGATGAAGAAT
TGATGGAAGAACGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGCA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTCGAAGAGGCTGTGTCAAACATCCGGGACCAATTGGACTCTTTGG
ATTATGATACAGAACGTGTGGAATTCATTGAAAGTCGACTTAATGAAATAAATCAATTAAAACGTAAATACGGACGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCAATTGAAGAAGAAGTCGAAAAGCTGCAAAATAGGGAAACCCATATCGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGACCTTATCGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAGGATCTATATATGGAAAAAACAATTTTTGAACCTCATTTCCTT
CAGACAGCCTATACTTTCGATGAATTGTCAGATAGGGGCATTAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGTGGAGAATTGTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCTAAGCATCAAGGGATAACGTCCATTATATTTGATGAAGTGGATACAGGTGTGAGCGGACGGGTTGCA
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTATTGTGCATATCCCATTTGCCACAGGTGGCAGC
CATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACATCGGTCAAGCCGCTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCGGGAGTAGAGATTACGGACTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTGGCCAAAAGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.59

100

0.611