Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNH16_RS09125 Genome accession   NZ_CP126098
Coordinates   1883785..1884141 (+) Length   118 a.a.
NCBI ID   WP_283867910.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LC22     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1878785..1889141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH16_RS09100 (QNH16_09100) - 1879100..1880536 (+) 1437 WP_249599113.1 amino acid permease -
  QNH16_RS09105 (QNH16_09105) - 1880731..1881852 (-) 1122 WP_283867512.1 type II asparaginase -
  QNH16_RS09110 (QNH16_09110) - 1882213..1882527 (-) 315 WP_283867513.1 hypothetical protein -
  QNH16_RS09115 (QNH16_09115) sda 1882835..1882987 (-) 153 WP_283867514.1 sporulation histidine kinase inhibitor Sda -
  QNH16_RS09120 (QNH16_09120) - 1883524..1883733 (+) 210 WP_142303872.1 hypothetical protein -
  QNH16_RS09125 (QNH16_09125) nucA/comI 1883785..1884141 (+) 357 WP_283867910.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QNH16_RS09130 (QNH16_09130) - 1884584..1885603 (-) 1020 WP_283867515.1 hypothetical protein -
  QNH16_RS09135 (QNH16_09135) - 1885838..1887268 (+) 1431 WP_283867516.1 IS4 family transposase -
  QNH16_RS09140 (QNH16_09140) - 1887839..1888225 (+) 387 WP_063576833.1 DoxX family membrane protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13154.33 Da        Isoelectric Point: 3.8347

>NTDB_id=835772 QNH16_RS09125 WP_283867910.1 1883785..1884141(+) (nucA/comI) [Peribacillus frigoritolerans strain LC22]
MKVKECLSEESYNVVINFPSEKYPEAAEQIEDAIADGSFNICTIDRNGADENRDESLENIQTRMGYDRDEYPMAMCEEGG
AGADIEYITPSDNRGAGSWVSHQLSDYPDGTKVLFVVE

Nucleotide


Download         Length: 357 bp        

>NTDB_id=835772 QNH16_RS09125 WP_283867910.1 1883785..1884141(+) (nucA/comI) [Peribacillus frigoritolerans strain LC22]
ATCAAAGTAAAGGAGTGTTTATCTGAGGAAAGTTATAATGTTGTAATTAACTTTCCGTCAGAAAAGTACCCGGAGGCAGC
TGAGCAAATAGAAGATGCCATTGCTGATGGAAGTTTCAATATTTGTACCATTGATAGAAATGGAGCAGACGAGAATCGTG
ATGAATCTTTGGAAAATATTCAAACTAGAATGGGATATGATCGTGATGAATACCCAATGGCCATGTGTGAAGAAGGGGGA
GCAGGAGCAGATATTGAGTATATAACCCCATCAGACAATCGTGGTGCTGGCTCGTGGGTATCTCATCAATTAAGTGACTA
TCCCGATGGTACAAAGGTTTTATTCGTTGTAGAGTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(23-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.748

90.678

0.551