Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNH16_RS06275 Genome accession   NZ_CP126098
Coordinates   1309118..1310935 (+) Length   605 a.a.
NCBI ID   WP_063591815.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LC22     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304118..1315935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH16_RS06255 (QNH16_06255) spxA 1304487..1304882 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  QNH16_RS06260 (QNH16_06260) mecA 1305377..1306045 (+) 669 WP_034314498.1 adaptor protein MecA -
  QNH16_RS06265 (QNH16_06265) cls 1306136..1307644 (+) 1509 WP_283867305.1 cardiolipin synthase -
  QNH16_RS06270 (QNH16_06270) - 1307742..1308950 (+) 1209 WP_052137493.1 competence protein CoiA family protein -
  QNH16_RS06275 (QNH16_06275) pepF 1309118..1310935 (+) 1818 WP_063591815.1 oligoendopeptidase F Regulator
  QNH16_RS06280 (QNH16_06280) - 1311859..1312725 (-) 867 WP_034315496.1 ClpXP adapter SpxH family protein -
  QNH16_RS06285 (QNH16_06285) - 1312749..1313153 (-) 405 WP_034314489.1 globin -
  QNH16_RS06290 (QNH16_06290) - 1313386..1314042 (-) 657 WP_283867306.1 lytic transglycosylase domain-containing protein -
  QNH16_RS06295 (QNH16_06295) - 1314074..1314652 (-) 579 WP_034314487.1 CYTH domain-containing protein -
  QNH16_RS06300 (QNH16_06300) - 1314972..1315592 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69823.26 Da        Isoelectric Point: 4.7412

>NTDB_id=835767 QNH16_RS06275 WP_063591815.1 1309118..1310935(+) (pepF) [Peribacillus frigoritolerans strain LC22]
MVQETKTNTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESKVEGFLEEKEELKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLELDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYGLNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=835767 QNH16_RS06275 WP_063591815.1 1309118..1310935(+) (pepF) [Peribacillus frigoritolerans strain LC22]
ATGGTACAGGAAACAAAAACGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACGTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAGGAAGACCTCAAGAAAGCGGAGGCGCATAAAGGGA
CGTTGGGAGAAAGCGCAGAAAAGCTATTTGCGGCCCTCCAACTTCAAGATGAGGTTTTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACACATGCGCAATGATCAAGATACAACCAATCCATTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
CGCACAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGACGAAAGTAAAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGAATTGAAATTATATAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCCTATCAGCAGAA
CAGGAAGAACTATTGGCACAGGCATCAGAAGTACTCGATGCATCGGGTAATACTTTCGGTATGCTTAACAATGCCGATCT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATTACTCACGGAAGGTATATCAGATTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTACGGGGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGTAA
TAATAACATTCCGGAGACCGTATACGATAATCTCGTTAAAACGGTCAACGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAGGTACTGGAATTAGATGAACTTCATATGTATGATTTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGACGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTAGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAGAACAAAGGGAAACGAAGCGGTGCCTATTCTTCGGGGACATACG
GGACGAACCCTTATATTCTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGTAAACATCAGCCATATCCATACGGGAATTATTCAATATTTGTAGCGGAAGTTGCATCCAC
TTGTAATGAAAACCTGTTGAATGATTATTTACTGAATTCGATCGAAGATGAAAAGAAACGCATCTATTTACTGAACCATT
ACCTGGAAGGCTTCCGTGGCACATTGTTCCGACAAACGATGTTTGCAGAGTTTGAACATACCATTCATTTAAAAGCTCAA
AATGGGGAAGCGTTGACGGCGGATATGCTTACTAAGGAATATTATGGGCTGAACAAGAAATACTTTGGCGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCTCGTATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCAACTG
GAATCAGTGCAGCAACAGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCTTG
AAATCAGGAAGTTCCGATTATCCGATTGAAGTACTCAAAAAGGCCGGCGTCGATATGACAAAAGCCGAGCCTGTACAAGA
AGCCATGAATGTATTCGAAGAAAAATTAAATGAGTTGGAAGAACTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.673

98.182

0.498