Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH16_RS00560 Genome accession   NZ_CP126098
Coordinates   106100..107488 (+) Length   462 a.a.
NCBI ID   WP_034305087.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LC22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101100..112488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH16_RS00540 (QNH16_00540) - 101222..101683 (+) 462 WP_034305095.1 CtsR family transcriptional regulator -
  QNH16_RS00545 (QNH16_00545) - 101705..102256 (+) 552 WP_034305093.1 UvrB/UvrC motif-containing protein -
  QNH16_RS00550 (QNH16_00550) - 102253..103329 (+) 1077 WP_034305092.1 protein arginine kinase -
  QNH16_RS00555 (QNH16_00555) clpC 103460..105901 (+) 2442 WP_034305090.1 ATP-dependent protease ATP-binding subunit ClpC -
  QNH16_RS00560 (QNH16_00560) radA 106100..107488 (+) 1389 WP_034305087.1 DNA repair protein RadA Machinery gene
  QNH16_RS00565 (QNH16_00565) disA 107491..108564 (+) 1074 WP_034305085.1 DNA integrity scanning diadenylate cyclase DisA -
  QNH16_RS00570 (QNH16_00570) - 108790..109887 (+) 1098 WP_034305083.1 PIN/TRAM domain-containing protein -
  QNH16_RS00575 (QNH16_00575) ispD 109909..110598 (+) 690 WP_283866907.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNH16_RS00580 (QNH16_00580) ispF 110613..111092 (+) 480 WP_034305078.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50216.86 Da        Isoelectric Point: 8.2388

>NTDB_id=835759 QNH16_RS00560 WP_034305087.1 106100..107488(+) (radA) [Peribacillus frigoritolerans strain LC22]
MAVKKKTKFMCQSCGYESAKWMGKCPGCGEWNKMVEETEIVKPARKGAFTHSEVRVSGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSENLFVYSETDM
DYIQQAITDVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPADCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERAIIPANNIGGWTAPKGIKIIGVSSVSEALKQSLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=835759 QNH16_RS00560 WP_034305087.1 106100..107488(+) (radA) [Peribacillus frigoritolerans strain LC22]
ATGGCTGTAAAAAAGAAAACGAAATTTATGTGTCAGTCTTGTGGGTATGAGTCCGCGAAATGGATGGGGAAATGCCCAGG
CTGCGGTGAATGGAACAAAATGGTCGAGGAAACCGAAATCGTTAAACCTGCAAGAAAAGGCGCTTTTACCCATTCAGAGG
TTAGAGTTTCCGGGGAACGGGAGAAGGCAGCACCCATAACGACCATTCAATCGGAAAAAGAACCACGCATTAAGACGGAT
CTAATGGAATTGAATCGTGCTCTTGGGGGCGGGATCGTACAGGGATCACTTGTATTGATCGGAGGGGACCCGGGTATCGG
TAAGTCCACCCTGCTTCTACAGGTATCATCCCAATTGGCGCATAAACAGAAAAAAGTGCTTTATATATCAGGTGAAGAAT
CAGTCAAGCAAACCAAATTGAGAGCGGACCGGCTTGGGACCATGTCGGAAAATCTATTCGTTTATTCTGAAACAGATATG
GACTATATCCAACAGGCAATTACAGACGTTAAACCGGATTTGGTCATTATTGACTCGATTCAAACGGTTTACCATTCGGA
GGTTACATCTGCCCCGGGAAGCGTTTCACAAGTGAGGGAATGCACAGCCTCACTCATGCGCATTGCTAAAACGAACGGGA
TTGCGATTTTTATCGTCGGTCACGTTACAAAAGAAGGGGCCATTGCGGGACCACGGCTGCTTGAGCACATGGTTGACACC
GTATTATATTTTGAAGGGGAAAGACACCATACATATCGAATTATACGTGCGGTTAAAAATCGCTTTGGTTCGACGAATGA
GATGGGTATTTTTGAAATGAAAGAACATGGATTGGAAGAGGTGGCGAATCCATCGGAAATTTTCCTTGAAGAACGGTCGC
AAGGAGCTTCGGGGTCCACAGTCGTCGCATCCATGGAGGGCACAAGGCCGGTGCTTGTTGAAATTCAAGCATTGATTTCT
CCTACGAGTTTTGGCAATCCGAGGCGGATGGCCACGGGAATTGATCACAATCGAGTTTCGCTTTTAATGGCTGTCCTGGA
AAAGAGAGTGGGCTTGCTGCTCCAAAACCAAGATGCGTATTTAAAGGTTGCTGGCGGTGTCAAGCTGGATGAACCGGCAA
TTGACCTCGCTGTCGCAATAAGCATTGCATCAAGCTTCCGTGATAAACCAACAAACCCTGCCGATTGCATCATTGGTGAA
GTGGGGCTGACTGGTGAAGTTAGAAGGGTGTCACGAATTGAACAAAGGGTGCAGGAAGCAGCGAAATTAGGGTTTGAGCG
GGCTATCATACCGGCTAATAATATAGGAGGGTGGACCGCGCCGAAAGGTATTAAGATCATTGGTGTTTCATCGGTTTCGG
AGGCTCTTAAACAATCGTTAGGGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-226)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.826

99.567

0.775
  radA Streptococcus pneumoniae Rx1

61.978

98.485

0.61
  radA Streptococcus pneumoniae D39

61.978

98.485

0.61
  radA Streptococcus pneumoniae R6

61.978

98.485

0.61
  radA Streptococcus pneumoniae TIGR4

61.978

98.485

0.61
  radA Streptococcus mitis NCTC 12261

61.978

98.485

0.61
  radA Streptococcus mitis SK321

61.758

98.485

0.608