Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QNK06_RS14845 Genome accession   NZ_CP126097
Coordinates   2789663..2790409 (-) Length   248 a.a.
NCBI ID   WP_247470622.1    Uniprot ID   -
Organism   Bacillus subtilis strain KF24     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2784663..2795409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS14820 (QNK06_14820) mreC 2785075..2785947 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  QNK06_RS14825 (QNK06_14825) mreB 2785978..2786991 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  QNK06_RS14830 (QNK06_14830) radC 2787083..2787778 (-) 696 WP_014480455.1 DNA repair protein RadC -
  QNK06_RS14835 (QNK06_14835) maf 2787815..2788384 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  QNK06_RS14840 (QNK06_14840) spoIIB 2788537..2789529 (-) 993 WP_144500661.1 stage II sporulation protein SpoIIB -
  QNK06_RS14845 (QNK06_14845) comC 2789663..2790409 (-) 747 WP_247470622.1 A24 family peptidase Machinery gene
  QNK06_RS14850 (QNK06_14850) folC 2790550..2791842 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QNK06_RS14855 (QNK06_14855) valS 2791902..2794544 (-) 2643 WP_283934480.1 valine--tRNA ligase -
  QNK06_RS14860 (QNK06_14860) - 2794992..2795183 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26437.01 Da        Isoelectric Point: 9.7944

>NTDB_id=835732 QNK06_RS14845 WP_247470622.1 2789663..2790409(-) (comC) [Bacillus subtilis strain KF24]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPALVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=835732 QNK06_RS14845 WP_247470622.1 2789663..2790409(-) (comC) [Bacillus subtilis strain KF24]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATAATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTCTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992