Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FFJ14_RS08615 Genome accession   NZ_AP024126
Coordinates   1780319..1780948 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NS-NP030     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775319..1785948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFJ14_RS08595 (BvCmsNSNP030_1714) ycbZ 1775708..1777468 (-) 1761 WP_000156526.1 Lon protease family protein -
  FFJ14_RS08600 (BvCmsNSNP030_1715) matP 1777654..1778106 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  FFJ14_RS08605 (BvCmsNSNP030_1716) ompA 1778182..1779234 (-) 1053 WP_000750419.1 porin OmpA -
  FFJ14_RS08610 (BvCmsNSNP030_1718) sulA 1779591..1780100 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FFJ14_RS08615 (BvCmsNSNP030_1719) sxy/tfoX 1780319..1780948 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FFJ14_RS08620 (BvCmsNSNP030_1720) yccS 1780911..1783073 (-) 2163 WP_000875015.1 YccS family putative transporter -
  FFJ14_RS08625 (BvCmsNSNP030_1721) yccF 1783083..1783529 (-) 447 WP_001261235.1 YccF domain-containing protein -
  FFJ14_RS08630 (BvCmsNSNP030_1722) helD 1783652..1785706 (+) 2055 WP_137516523.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=83573 FFJ14_RS08615 WP_000839153.1 1780319..1780948(+) (sxy/tfoX) [Escherichia coli strain NS-NP030]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=83573 FFJ14_RS08615 WP_000839153.1 1780319..1780948(+) (sxy/tfoX) [Escherichia coli strain NS-NP030]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment