Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QNK06_RS13520 Genome accession   NZ_CP126097
Coordinates   2565593..2566360 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain KF24     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2560593..2571360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS13500 (QNK06_13500) ppsR 2560763..2561575 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  QNK06_RS13505 (QNK06_13505) ccpN 2561601..2562239 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  QNK06_RS13510 (QNK06_13510) glyS 2562376..2564415 (-) 2040 WP_038829712.1 glycine--tRNA ligase subunit beta -
  QNK06_RS13515 (QNK06_13515) glyQ 2564408..2565295 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  QNK06_RS13520 (QNK06_13520) recO 2565593..2566360 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  QNK06_RS13525 (QNK06_13525) yqzL 2566397..2566540 (-) 144 WP_003230053.1 YqzL family protein -
  QNK06_RS13530 (QNK06_13530) era 2566688..2567593 (-) 906 WP_003230051.1 GTPase Era -
  QNK06_RS13535 (QNK06_13535) cdd 2567574..2567984 (-) 411 WP_003230049.1 cytidine deaminase -
  QNK06_RS13540 (QNK06_13540) unpK 2568103..2568474 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  QNK06_RS13545 (QNK06_13545) ybeY 2568455..2568928 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  QNK06_RS13550 (QNK06_13550) pgpH 2568929..2571064 (-) 2136 WP_283933571.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=835724 QNK06_RS13520 WP_014477369.1 2565593..2566360(-) (recO) [Bacillus subtilis strain KF24]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=835724 QNK06_RS13520 WP_014477369.1 2565593..2566360(-) (recO) [Bacillus subtilis strain KF24]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996