Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QNK06_RS12990 Genome accession   NZ_CP126097
Coordinates   2475702..2476505 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain KF24     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2470702..2481505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS12965 (QNK06_12965) glpQ 2471842..2472573 (-) 732 WP_169037826.1 glycerophosphodiester phosphodiesterase -
  QNK06_RS12970 (QNK06_12970) yqiI 2472652..2473272 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  QNK06_RS12975 (QNK06_12975) - 2473292..2473588 (-) 297 WP_169037825.1 hypothetical protein -
  QNK06_RS12980 (QNK06_12980) - 2473896..2474048 (+) 153 WP_014480226.1 hypothetical protein -
  QNK06_RS12985 (QNK06_12985) yqiG 2474121..2475239 (+) 1119 WP_131227606.1 NADH-dependent flavin oxidoreductase -
  QNK06_RS12990 (QNK06_12990) spo0A 2475702..2476505 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QNK06_RS12995 (QNK06_12995) spoIVB 2476781..2478061 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  QNK06_RS13000 (QNK06_13000) recN 2478236..2479966 (-) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  QNK06_RS13005 (QNK06_13005) argR 2480003..2480452 (-) 450 WP_029317927.1 arginine repressor ArgR -
  QNK06_RS13010 (QNK06_13010) yqxC 2480550..2481395 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=835713 QNK06_RS12990 WP_003226427.1 2475702..2476505(-) (spo0A) [Bacillus subtilis strain KF24]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=835713 QNK06_RS12990 WP_003226427.1 2475702..2476505(-) (spo0A) [Bacillus subtilis strain KF24]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1