Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QNK06_RS12010 Genome accession   NZ_CP126097
Coordinates   2299854..2300474 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain KF24     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2294854..2305474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS11970 (QNK06_11970) ypqE 2295985..2296491 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  QNK06_RS11975 (QNK06_11975) ypqA 2296629..2297048 (+) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  QNK06_RS11980 (QNK06_11980) yppG 2297069..2297446 (-) 378 WP_014477159.1 YppG family protein -
  QNK06_RS11985 (QNK06_11985) yppF 2297634..2297822 (+) 189 WP_003230690.1 YppF family protein -
  QNK06_RS11990 (QNK06_11990) yppE 2297861..2298232 (-) 372 WP_003246080.1 YppE family protein -
  QNK06_RS11995 (QNK06_11995) yppD 2298278..2298523 (-) 246 WP_038828603.1 YppD family protein -
  QNK06_RS12000 (QNK06_12000) sspM 2298722..2298826 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QNK06_RS12005 (QNK06_12005) yppC 2298851..2299813 (-) 963 WP_064671082.1 DUF2515 domain-containing protein -
  QNK06_RS12010 (QNK06_12010) recU 2299854..2300474 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  QNK06_RS12015 (QNK06_12015) ponA 2300496..2303240 (+) 2745 WP_077671381.1 PBP1A family penicillin-binding protein -
  QNK06_RS12020 (QNK06_12020) ypoC 2303316..2303810 (-) 495 WP_283933520.1 YpoC family protein -
  QNK06_RS12025 (QNK06_12025) nth 2303807..2304466 (-) 660 WP_009967580.1 endonuclease III -
  QNK06_RS12030 (QNK06_12030) dnaD 2304485..2305183 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=835712 QNK06_RS12010 WP_004399067.1 2299854..2300474(+) (recU) [Bacillus subtilis strain KF24]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=835712 QNK06_RS12010 WP_004399067.1 2299854..2300474(+) (recU) [Bacillus subtilis strain KF24]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1