Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QNK06_RS08720 Genome accession   NZ_CP126097
Coordinates   1653181..1654074 (+) Length   297 a.a.
NCBI ID   WP_249851048.1    Uniprot ID   -
Organism   Bacillus subtilis strain KF24     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1648181..1659074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS08700 (QNK06_08700) - 1648851..1650581 (+) 1731 WP_283934349.1 hypothetical protein -
  QNK06_RS08705 (QNK06_08705) ylqH 1650578..1650859 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  QNK06_RS08710 (QNK06_08710) sucC 1651032..1652189 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  QNK06_RS08715 (QNK06_08715) sucD 1652218..1653120 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  QNK06_RS08720 (QNK06_08720) dprA 1653181..1654074 (+) 894 WP_249851048.1 DNA-processing protein DprA Machinery gene
  QNK06_RS08725 (QNK06_08725) topA 1654262..1656337 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  QNK06_RS08730 (QNK06_08730) trmFO 1656413..1657720 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QNK06_RS08735 (QNK06_08735) xerC 1657788..1658702 (+) 915 WP_172861369.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32861.20 Da        Isoelectric Point: 9.7057

>NTDB_id=835708 QNK06_RS08720 WP_249851048.1 1653181..1654074(+) (dprA) [Bacillus subtilis strain KF24]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQCVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGPLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=835708 QNK06_RS08720 WP_249851048.1 1653181..1654074(+) (dprA) [Bacillus subtilis strain KF24]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCTGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGTGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTCCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.316

100

0.983
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377